more information, see the user manual.
ICeE is under the GNU General Public License.
Download the current version of ICeE
WormBase Converter is a tool for researchers who need to
- produce up-to-date lists of C. elegans genes, for example starting with a large list culled from the literature.
- convert different types of identifiers: a "WormBase ID" into "Gene Sequence Name", for example.
- convert lists of C. elegans genes from one WormBase release to another, taking into account changes in gene predictions.
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Engelmann I, Griffon A, Tichit L, Montañana-Sanchis F, Wang G, Reinke V, Waterston RH, Hillier LW, Ewbank JJ. (2011). A comprehensive analysis of gene expression changes provoked by bacterial and fungal infection in C. elegans. PLoS One 6, e19055.
Frédéric Montañana, Renaud A Julien, Philippe Vaglio, Lisa R Matthews, Laurent Tichit, Jonathan J Ewbank (2014). ICeE: an interface for C. elegans experiments. Worm 3, e32160. http://dx.doi.org/10.4161/worm.32160
Thakur N, Pujol N, Tichit L, Ewbank JJ. (2014). Clone Mapper: an online suite of tools for RNAi experiments in Caenorhabditis elegans. G3 (Bethesda) pii: g3.114.013052.doi: 10.1534/g3.114.013052.
Vallin E, et al., (2012). A genome-wide collection of Mos1 transposon insertion mutants for the C. elegans research community. PLoS One 7, e30482.