This page gives access to the sequence data associated with 2 articles dealing with the genome of the fungus Drechmeria coniospora.

The first part concerns

Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods

GigaScience, Volume 9, Issue 9, September 2020, giaa099, https://doi.org/10.1093/gigascience/giaa099

It comprises assembled genomes, before and after short-read polishing for 3 isolates of the fungus Drechmeria coniospora, which we refer to as

Swe1 [ATCC96282; after minimal laboratory culture]

Swe3 [ATCC96282; after 20 years of laboratory culture]

and

Dan1 [CBS615.82; after minimal laboratory culture]

Before short-read polishing

Swe1: http://www.ciml.univ-mrs.fr/applications/DC/before/Swe1.fa.tar.gz

Swe3: http://www.ciml.univ-mrs.fr/applications/DC/before/Swe3.fa.tar.gz

Dan1: http://www.ciml.univ-mrs.fr/applications/DC/before/Dan1.fa.tar.gz

After short-read polishing

Swe1: http://www.ciml.univ-mrs.fr/applications/DC/after/Swe1.fa.gz

Swe3: http://www.ciml.univ-mrs.fr/applications/DC/after/Swe3.fa.gz

Dan1: http://www.ciml.univ-mrs.fr/applications/DC/after/Dan1.fa.gz

For completeness, we also include the reassembled genome of “Swe2”, [ATCC96282; after 14 years of laboratory culture] that was based on GenBank assembly GCA_001618945.1: http://www.ciml.univ-mrs.fr/applications/DC/Swe2.fa.gz

The second concerns

Increased pathogenicity of the nematophagous fungus Drechmeria coniospora following long-term laboratory culture.

This is currently a preprint. Once available on BioRxiv, the URL will be added here.

It comprises updates for the 3 Swe genomes:

Swe1: http://www.ciml.univ-mrs.fr/applications/DC/Domestic/Swe1.fa.gz

Swe2: http://www.ciml.univ-mrs.fr/applications/DC/Domestic/Swe2.fa.gz

Swe3: http://www.ciml.univ-mrs.fr/applications/DC/Domestic/Swe3.fa.gz

And the updated set of predicted protein coding genes for Swe2:

Swe2 predicted protein-coding genes: http://www.ciml.univ-mrs.fr/applications/DC/Domestic/Swe2_files/Swe2.gene.fa.gz

Swe2 predicted protein-coding gene transcripts: http://www.ciml.univ-mrs.fr/applications/DC/Domestic/Swe2_files/Swe2.transcript.fa.gz

Swe2 predicted proteins: http://www.ciml.univ-mrs.fr/applications/DC/Domestic/Swe2_files/Swe2.protein.fa.gz

Swe2 genome general feature format (gff) file: http://www.ciml.univ-mrs.fr/applications/DC/Domestic/Swe2_files/Swe2.gff.gz