Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.RID: 1008066419-3288-4182
Query= b2361 (187 letters)
Database: nr 817,764 sequences; 260,033,525 total letters
If you have any problems or questions with the results of this search
please refer to the BLAST FAQsScore E Sequences producing significant alignments: (bits) Value ref|NP_416862.1| (NC_000913) orf, hypothetical protein [Esc... 350 3e-96 sp|P76514|YFDR_ECOLI HYPOTHETICAL 20.3 KDA PROTEIN IN TFAS-... 332 8e-91 ref|NP_354075.1| (NC_003062) AGR_C_1942p [Agrobacterium tum... 61 6e-09 ref|NP_420264.1| (NC_002696) conserved hypothetical protein... 56 1e-07 dbj|BAA34643.1| (AB020211) unnamed protein product [Roseoba... 52 2e-06 ref|NP_108031.1| (NC_002678) hypothetical protein [Mesorhiz... 49 3e-05 ref|NP_385209.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 49 3e-05 sp|P42506|YAHC_RHOCA HYPOTHETICAL 21.6 KD PROTEIN IN AHCY-H... 48 6e-05 gb|AAB88243.1| (U76671) putative cds [Rhodobacter sphaeroides] 39 0.022 ref|NP_231612.1| (NC_002505) conserved hypothetical protein... 36 0.18 ref|XP_003533.4| (XM_003533) G-rich RNA sequence binding fa... 34 0.58 ref|NP_002083.1| (NM_002092) G-rich RNA sequence binding fa... 33 1.0 ref|NP_406090.1| (NC_003143) conserved hypothetical protein... 33 1.7 ref|NP_245684.1| (NC_002663) unknown [Pasteurella multocida... 33 2.0 ref|NP_228457.1| (NC_000853) conserved hypothetical protein... 31 5.6 ref|NP_436668.1| (NC_003078) putative deaminase protein [Si... 31 6.3 gb|AAK16079.1|AF288081_1 (AF288081) YbaA [Photorhabdus lumi... 31 6.4 ref|NP_489171.1| (NC_003272) transcriptional regulator [Nos... 31 7.3 gb|AAD00900.1| (AF001836) FIR1 [Rhodococcus fascians] 30 7.9 ref|NP_461274.1| (NC_003197) putative hydrolase of HD super... 30 9.3Alignments >ref|NP_416862.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12] pir||F65009 hypothetical protein b2361 - Escherichia coli (strain K-12) gb|AAC75420.1| (AE000324) orf, hypothetical protein [Escherichia coli K12] Length = 187 Score = 350 bits (899), Expect = 3e-96 Identities = 174/187 (93%), Positives = 174/187 (93%) Query: 1 MQRIYVENKMSFIKTFSGKHFYYXXXXXXXXXXXXXAVSLSNICRFAGHLSHFYSVAQHA 60 MQRIYVENKMSFIKTFSGKHFYY AVSLSNICRFAGHLSHFYSVAQHA Sbjct: 1 MQRIYVENKMSFIKTFSGKHFYYDKINKDDIVINDIAVSLSNICRFAGHLSHFYSVAQHA 60 Query: 61 VLCSQLVPQEFAFEALMHDATEAYCQDIPAPLKRLLPDYKRMEEKIDAVIREKYGLPPVM 120 VLCSQLVPQEFAFEALMHDATEAYCQDIPAPLKRLLPDYKRMEEKIDAVIREKYGLPPVM Sbjct: 61 VLCSQLVPQEFAFEALMHDATEAYCQDIPAPLKRLLPDYKRMEEKIDAVIREKYGLPPVM 120 Query: 121 STPVKYADLIMLATERRDLGLDDGSFWPVLEGIPATEMFNVIPLAPGHAYGMFMERFNDL 180 STPVKYADLIMLATERRDLGLDDGSFWPVLEGIPATEMFNVIPLAPGHAYGMFMERFNDL Sbjct: 121 STPVKYADLIMLATERRDLGLDDGSFWPVLEGIPATEMFNVIPLAPGHAYGMFMERFNDL 180 Query: 181 SELRKCA 187 SELRKCA Sbjct: 181 SELRKCA 187>sp|P76514|YFDR_ECOLI HYPOTHETICAL 20.3 KDA PROTEIN IN TFAS-DSDC INTERGENIC REGION Length = 178 Score = 332 bits (852), Expect = 8e-91 Identities = 165/178 (92%), Positives = 165/178 (92%) Query: 10 MSFIKTFSGKHFYYXXXXXXXXXXXXXAVSLSNICRFAGHLSHFYSVAQHAVLCSQLVPQ 69 MSFIKTFSGKHFYY AVSLSNICRFAGHLSHFYSVAQHAVLCSQLVPQ Sbjct: 1 MSFIKTFSGKHFYYDKINKDDIVINDIAVSLSNICRFAGHLSHFYSVAQHAVLCSQLVPQ 60 Query: 70 EFAFEALMHDATEAYCQDIPAPLKRLLPDYKRMEEKIDAVIREKYGLPPVMSTPVKYADL 129 EFAFEALMHDATEAYCQDIPAPLKRLLPDYKRMEEKIDAVIREKYGLPPVMSTPVKYADL Sbjct: 61 EFAFEALMHDATEAYCQDIPAPLKRLLPDYKRMEEKIDAVIREKYGLPPVMSTPVKYADL 120 Query: 130 IMLATERRDLGLDDGSFWPVLEGIPATEMFNVIPLAPGHAYGMFMERFNDLSELRKCA 187 IMLATERRDLGLDDGSFWPVLEGIPATEMFNVIPLAPGHAYGMFMERFNDLSELRKCA Sbjct: 121 IMLATERRDLGLDDGSFWPVLEGIPATEMFNVIPLAPGHAYGMFMERFNDLSELRKCA 178>ref|NP_354075.1| (NC_003062) AGR_C_1942p [Agrobacterium tumefaciens] gb|AAK86860.1| (AE008035) AGR_C_1942p [Agrobacterium tumefaciens] Length = 226 Score = 60.8 bits (146), Expect = 6e-09 Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 21/167 (12%) Query: 37 AVSLSNICRFAGHL--SHFYSVAQHAV--------LCSQLVPQEFAFEALMHDATEAYCQ 86 A L+ + R+ G H ++VAQH + +C P E AL+HDA E Sbjct: 54 AHGLARVARWNGQTRGDHAFTVAQHCLIVETIFCRMCPGATPDEMQM-ALLHDAPEYVIG 112 Query: 87 DIPAPLKRLL-PDYKRMEEKIDAVIREKYGLPPVMSTP----VKYADLIMLATERRDLG- 140 D+ +P K ++ YK +E++++A + ++GLPP S +K AD + E +L Sbjct: 113 DMISPFKSVVGGGYKTVEKRLEAAVHLRFGLPPHASRELKDRIKKADTVAAFFEATELAG 172 Query: 141 ---LDDGSFWPVLEGIPATEMFNVIPLAPGHAYGMFMERFNDLSELR 184 + F+ + GI +MF++IPL A +F+ RF + LR Sbjct: 173 FSTAEAQKFFGLPRGI-TRDMFDIIPLPSTEAQRLFIARFEAIETLR 218>ref|NP_420264.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus] gb|AAK23432.1| (AE005819) conserved hypothetical protein [Caulobacter crescentus] Length = 250 Score = 56.2 bits (134), Expect = 1e-07 Identities = 46/160 (28%), Positives = 73/160 (44%), Gaps = 15/160 (9%) Query: 37 AVSLSNICRFAGHL--SHFYSVAQHAVLCSQLVPQ-------EFAFEALMHDATEAYCQD 87 A L+ + R+ G H +SVAQH+++ ++ + AL+HDA+E D Sbjct: 75 AHGLARVARWNGQTVGDHGFSVAQHSLVVEEIAAHIKPDLEPRWRLAALLHDASEYVIGD 134 Query: 88 IPAPLKRLLP-DYKRMEEKIDAVIREKYGLPPVMSTP----VKYADLIMLATERRDL-GL 141 + +P K L YK E +++ I ++GLP TP +K AD E L G Sbjct: 135 MISPFKAALGVSYKDFETRLEDAIHIRFGLPVKTPTPIKKLIKQADRACAFFEATQLAGF 194 Query: 142 DDGSFWPVLEGIPATEMFNVIPLAPGHAYGMFMERFNDLS 181 + + PA + PLAP A +++RF+ LS Sbjct: 195 EHAESLAIFGAPPAGYELRITPLAPFEAQARYVKRFHVLS 234>dbj|BAA34643.1| (AB020211) unnamed protein product [Roseobacter denitrificans] Length = 195 Score = 52.4 bits (124), Expect = 2e-06 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 10/99 (10%) Query: 37 AVSLSNICRFAGHLS--HFYSVAQHAVLCSQLV-------PQEFAFEALMHDATEAYCQD 87 A L+ + R+ G S H YSVA+H++L L P ++ AL+HDA E D Sbjct: 30 ARGLAFVARWNGQTSGAHAYSVAEHSLLVETLFTRIADKSPAKWRLAALLHDAPEYVIGD 89 Query: 88 IPAPLKRLL-PDYKRMEEKIDAVIREKYGLPPVMSTPVK 125 + +P+K + P Y+ ++E++ A I ++GLP + VK Sbjct: 90 MISPVKAAVGPGYEALDERLTAAIHLRFGLPAAIPVAVK 128>ref|NP_108031.1| (NC_002678) hypothetical protein [Mesorhizobium loti] dbj|BAB54176.1| (AP003012) hypothetical protein [Mesorhizobium loti] Length = 211 Score = 48.9 bits (115), Expect = 3e-05 Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 19/166 (11%) Query: 37 AVSLSNICRFAGHLS--HFYSVAQHAVLC----SQLVPQEFA---FEALMHDATEAYCQD 87 A L+ + R+ G S H +SVAQH++L + LVPQ A AL+HDA E D Sbjct: 38 AHGLARVARWNGQTSGEHAFSVAQHSLLVEALFNDLVPQASATDRLAALLHDAPEYVIGD 97 Query: 88 IPAPLKRLL-PDYKRMEEKIDAVIREKYGLP----PVMSTPVKYADLIMLATERRDLG-- 140 + +P K ++ YK E ++ I +++ LP + +K AD I E L Sbjct: 98 MISPFKSVMGGSYKDCELRLQRAIHQRFSLPAEPAAAVRRDIKRADQIAAYFEATLLAGF 157 Query: 141 --LDDGSFWPVLEGIPATEMFNVIPLAPGHAYGMFMERFNDLSELR 184 + F+ G A E F+ P + A F++RF+ L + R Sbjct: 158 STAEATEFFGRPRGFSA-ERFDFTPRSVTWAQDAFLKRFSALEKSR 202>ref|NP_385209.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti] emb|CAC45682.1| (AL591786) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti] Length = 202 Score = 48.5 bits (114), Expect = 3e-05 Identities = 49/167 (29%), Positives = 79/167 (46%), Gaps = 22/167 (13%) Query: 37 AVSLSNICRFAGHLS--HFYSVAQHAVLCSQLVPQ------EFAFEALMHDATEAYCQDI 88 A L+ + R+ G S H +SVAQH+++ ++ + + AL+HDA E D+ Sbjct: 32 AHGLARVARWNGQTSGDHAFSVAQHSLVVEEIFRRTNRCDAQDCLMALLHDAPEYVIGDM 91 Query: 89 PAPLKRLL-PDYKRMEEKIDAVIREKYGLPPVMSTP------VKYADLIML---ATERRD 138 +P K ++ YK +E++++ + ++GLP TP +K AD I ATE Sbjct: 92 ISPFKAVVGGGYKTVEKRLENAVHLRFGLPA--HTPRELKERIKKADRIAAYFEATELAG 149 Query: 139 LGLDDG-SFWPVLEGIPATEMFNVIPLAPGHAYGMFMERFNDLSELR 184 ++ F+ GI EM + PL A +F RFN L R Sbjct: 150 FSAEEARKFFGQPRGI-TREMLLIDPLPAVEAQRLFATRFNALESER 195>sp|P42506|YAHC_RHOCA HYPOTHETICAL 21.6 KD PROTEIN IN AHCY-HVRB INTERGENIC REGION (ORF5) pir||B36863 hvrB 5'-region protein - Rhodobacter capsulatus gb|AAA53541.1| (L23836) orf5 [Rhodobacter capsulatus] Length = 196 Score = 47.8 bits (112), Expect = 6e-05 Identities = 29/101 (28%), Positives = 55/101 (53%), Gaps = 10/101 (9%) Query: 37 AVSLSNICRFAGHLS--HFYSVAQHAVLCSQL-------VPQEFAFEALMHDATEAYCQD 87 A L+ + R+ G + + YSVA+H++L +L + + + AL+HDA E D Sbjct: 30 AHGLAFVARWNGQTTGDYAYSVAEHSLLVEELFARANPGIGERWRLAALLHDAPEYVLGD 89 Query: 88 IPAPLKRLL-PDYKRMEEKIDAVIREKYGLPPVMSTPVKYA 127 + P+K + Y +++++ A + ++GLP V+ P+K A Sbjct: 90 MITPVKAAIGKGYVELDDRLTAAVHLRFGLPAVLPAPIKRA 130>gb|AAB88243.1| (U76671) putative cds [Rhodobacter sphaeroides] Length = 194 Score = 38.9 bits (89), Expect = 0.022 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 8/80 (10%) Query: 54 YSVAQHAVL-------CSQLVPQEFAFEALMHDATEAYCQDIPAPLKRLL-PDYKRMEEK 105 +SVA+H++L C V + AL+HDA E D+ +P+K + Y ++ + Sbjct: 49 FSVAEHSLLVEEILGRCQPRVQTRWRLAALLHDAPEYVIGDMISPVKDAIGAQYGDLDAR 108 Query: 106 IDAVIREKYGLPPVMSTPVK 125 + A I ++GLP + VK Sbjct: 109 LTAAIHLRFGLPAQLPLQVK 128>ref|NP_231612.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae] pir||A82132 conserved hypothetical protein VC1978 [imported] - Vibrio cholerae (group O1 strain N16961) gb|AAF95126.1| (AE004273) conserved hypothetical protein [Vibrio cholerae] Length = 233 Score = 36.2 bits (82), Expect = 0.18 Identities = 17/64 (26%), Positives = 32/64 (49%) Query: 50 LSHFYSVAQHAVLCSQLVPQEFAFEALMHDATEAYCQDIPAPLKRLLPDYKRMEEKIDAV 109 ++H +V ++ L P+ A A+ HD +E D+P P+K P+ + +KI+A Sbjct: 79 VAHALAVIKNKKFGGTLNPERIALLAMYHDTSEVLTGDLPTPIKYFNPEIAKEYKKIEAA 138 Query: 110 IREK 113 + Sbjct: 139 AERR 142Database: nr Posted date: Dec 10, 2001 3:51 PM Number of letters in database: 260,033,525 Number of sequences in database: 817,764 Lambda K H 0.325 0.140 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,146,944 Number of Sequences: 817764 Number of extensions: 3301167 Number of successful extensions: 12027 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 15 Number of HSP's that attempted gapping in prelim test: 12004 Number of HSP's gapped (non-prelim): 24 length of query: 187 length of database: 260,033,525 effective HSP length: 113 effective length of query: 74 effective length of database: 167,626,193 effective search space: 12404338282 effective search space used: 12404338282 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 67 (30.4 bits)