Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.RID: 1008170926-3055-26763
Query= gi|16121825|ref|NP_405138.1| putative exported protein [Yersinia pestis] (144 letters)
Database: nr 837,281 sequences; 264,667,755 total letters
If you have any problems or questions with the results of this search
please refer to the BLAST FAQsScore E Sequences producing significant alignments: (bits) Value ref|NP_405138.1| (NC_003143) putative exported protein [Yer... 215 4e-56 ref|NP_459276.1| (NC_003197) putative periplasmic protein [... 56 6e-08 ref|NP_405732.1| (NC_003143) hypothetical protein [Yersinia... 55 9e-08 ref|NP_406029.1| (NC_003143) putative membrane protein [Yer... 52 8e-07 ref|NP_469450.1| (NC_003212) highly similar to putative ter... 30 3.1 gb|AAD21622.1| (AF128399) succinyl-CoA synthetase beta subu... 29 5.6 ref|NP_250279.1| (NC_002516) succinyl-CoA synthetase beta c... 29 6.0 ref|NP_070649.1| (NC_000917) serine/threonine phosphatase (... 29 7.7 sp|O82864|AHPF_PSEPU ALKYL HYDROPEROXIDE REDUCTASE SUBUNIT ... 29 8.4 sp|P20376|VD11_BPT5 D11 PROTEIN >gi|76138|pir||WBBPT5 gene ... 28 9.4 ref|NP_469821.1| (NC_003212) lin0477 [Listeria innocua] >gi... 28 9.5Alignments >ref|NP_405138.1| (NC_003143) putative exported protein [Yersinia pestis] emb|CAC90375.1| (AJ414149) putative exported protein [Yersinia pestis] Length = 144 Score = 215 bits (548), Expect = 4e-56 Identities = 144/144 (100%), Positives = 144/144 (100%) Query: 1 MARLEPTWMYLRRLYDLPVLSVAGTLSITSLIFLISFSTLAAEVNQNKVQQKNNLENFAL 60 MARLEPTWMYLRRLYDLPVLSVAGTLSITSLIFLISFSTLAAEVNQNKVQQKNNLENFAL Sbjct: 1 MARLEPTWMYLRRLYDLPVLSVAGTLSITSLIFLISFSTLAAEVNQNKVQQKNNLENFAL 60 Query: 61 SICLAEGFPDGEINSEAFSAVGAYVELGAYPVEAYEEVSELAKKFLEKKYISKNGESKLT 120 SICLAEGFPDGEINSEAFSAVGAYVELGAYPVEAYEEVSELAKKFLEKKYISKNGESKLT Sbjct: 61 SICLAEGFPDGEINSEAFSAVGAYVELGAYPVEAYEEVSELAKKFLEKKYISKNGESKLT 120 Query: 121 VMKCIDLSQSSELSAIKDKYTRHI 144 VMKCIDLSQSSELSAIKDKYTRHI Sbjct: 121 VMKCIDLSQSSELSAIKDKYTRHI 144>ref|NP_459276.1| (NC_003197) putative periplasmic protein [Salmonella typhimurium LT2] gb|AAL19235.1| (AE008707) putative periplasmic protein [Salmonella typhimurium LT2] Length = 127 Score = 55.8 bits (133), Expect = 6e-08 Identities = 37/98 (37%), Positives = 51/98 (51%), Gaps = 5/98 (5%) Query: 41 AAEVNQNKVQQKNNLENFALSICLAEGFPDGEINSEAFSAVGAYVELGAYPVEAYEEVSE 100 A E + Q L+N+ALS CLA + D + ++A + AY+E G VE Y E+ E Sbjct: 26 AQEALTTQYSQSELLKNWALSHCLALVYKDDVVKNDARATASAYLEYGKQSVEIYHEIDE 85 Query: 101 LAKKFLEKKYISKNG--ESKLTVMKCIDLSQSSELSAI 136 +AKK+ KY NG S MKCID EL+ + Sbjct: 86 IAKKYSGLKY---NGSISSDFNTMKCIDFIHDRELNEL 120>ref|NP_405732.1| (NC_003143) hypothetical protein [Yersinia pestis] emb|CAC90996.1| (AJ414151) hypothetical protein [Yersinia pestis] Length = 82 Score = 55.1 bits (131), Expect = 9e-08 Identities = 24/24 (100%), Positives = 24/24 (100%) Query: 1 MARLEPTWMYLRRLYDLPVLSVAG 24 MARLEPTWMYLRRLYDLPVLSVAG Sbjct: 30 MARLEPTWMYLRRLYDLPVLSVAG 53>ref|NP_406029.1| (NC_003143) putative membrane protein [Yersinia pestis] emb|CAC91300.1| (AJ414152) putative membrane protein [Yersinia pestis] Length = 60 Score = 52.0 bits (123), Expect = 8e-07 Identities = 23/24 (95%), Positives = 23/24 (95%) Query: 1 MARLEPTWMYLRRLYDLPVLSVAG 24 MARLEPTWMYLRRLYDL VLSVAG Sbjct: 16 MARLEPTWMYLRRLYDLSVLSVAG 39>ref|NP_469450.1| (NC_003212) highly similar to putative terminase small subunit [Bacteriophage A118] [Listeria innocua] emb|CAC95337.1| (AL596163) highly similar to putative terminase small subunit [Bacteriophage A118] [Listeria innocua] Length = 180 Score = 30.4 bits (67), Expect = 3.1 Identities = 17/52 (32%), Positives = 31/52 (58%), Gaps = 2/52 (3%) Query: 93 EAYEEVSELAKKFLEKKYISKNGESKLTVMKCIDLSQSSELSAIKDKYTRHI 144 EA + +E+A+ +E++ I NG+ V K D++Q +SA+K+ RH+ Sbjct: 68 EAMQLFTEIARGEMEEEVIVSNGDGFSVVTKSADINQ--RVSALKEIVKRHV 117>gb|AAD21622.1| (AF128399) succinyl-CoA synthetase beta subunit [Pseudomonas aeruginosa] Length = 388 Score = 29.3 bits (64), Expect = 5.6 Identities = 18/63 (28%), Positives = 33/63 (51%), Gaps = 6/63 (9%) Query: 88 GAYPVEAYEEVSELAKKFLEKKYIS----KNGE--SKLTVMKCIDLSQSSELSAIKDKYT 141 G V++ E+ A+++L K ++ NG+ SK+ V C D+ + L A+ D+ + Sbjct: 59 GVKLVKSKEDAKAFAQQWLGKNLVTYQTDANGQPVSKILVESCTDIDKELYLGAVVDRSS 118 Query: 142 RHI 144 R I Sbjct: 119 RRI 121>ref|NP_250279.1| (NC_002516) succinyl-CoA synthetase beta chain [Pseudomonas aeruginosa] sp|P53593|SUCC_PSEAE SUCCINYL-COA SYNTHETASE BETA CHAIN (SCS-BETA) pir||A83446 succinyl-CoA synthetase beta chain PA1588 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG04977.1|AE004587_1 (AE004587) succinyl-CoA synthetase beta chain [Pseudomonas aeruginosa] Length = 388 Score = 29.3 bits (64), Expect = 6.0 Identities = 18/63 (28%), Positives = 33/63 (51%), Gaps = 6/63 (9%) Query: 88 GAYPVEAYEEVSELAKKFLEKKYIS----KNGE--SKLTVMKCIDLSQSSELSAIKDKYT 141 G V++ E+ A+++L K ++ NG+ SK+ V C D+ + L A+ D+ + Sbjct: 59 GVKLVKSKEDAKAFAQQWLGKNLVTYQTDANGQPVSKILVESCTDIDKELYLGAVVDRSS 118 Query: 142 RHI 144 R I Sbjct: 119 RRI 121>ref|NP_070649.1| (NC_000917) serine/threonine phosphatase (ppa) [Archaeoglobus fulgidus] pir||E69477 probable phosphoprotein phosphatase (EC 3.1.3.16) - Archaeoglobus fulgidus gb|AAB89430.1| (AE000977) serine/threonine phosphatase (ppa) [Archaeoglobus fulgidus] Length = 268 Score = 28.9 bits (63), Expect = 7.7 Identities = 17/40 (42%), Positives = 22/40 (54%), Gaps = 3/40 (7%) Query: 81 VGAYVELGAYPVEAYEEVSELAKKFLEKKYISKNGESKLT 120 +G Y + G YPVE YE+V L FLE K + G + T Sbjct: 54 LGDYADRGDYPVECYEKVLRL---FLEGKALLLRGNHEST 90>sp|O82864|AHPF_PSEPU ALKYL HYDROPEROXIDE REDUCTASE SUBUNIT F dbj|BAA31469.1| (AB010689) AhpF [Pseudomonas putida] Length = 520 Score = 28.9 bits (63), Expect = 8.4 Identities = 25/82 (30%), Positives = 38/82 (45%), Gaps = 13/82 (15%) Query: 67 GFPDGEINSEAFSAVGAYVELGAYPVEAYEEVSE----LAKKFLEKKYISKNGESKLTVM 122 G P G E S V A +++G +P +A EV E L +F + Y S L+ Sbjct: 79 GIPMGH---EFTSLVLALLQVGGHPSKASAEVIEQIQALEGEFNFETYFS------LSCQ 129 Query: 123 KCIDLSQSSELSAIKDKYTRHI 144 C D+ Q+ L A+ + RH+ Sbjct: 130 NCPDVVQALNLMAVLNPNVRHV 151>sp|P20376|VD11_BPT5 D11 PROTEIN pir||WBBPT5 gene D11 protein - phage T5 emb|CAA04584.1| (AJ001191) D11 protein [Bacteriophage T5] Length = 257 Score = 28.5 bits (62), Expect = 9.4 Identities = 18/48 (37%), Positives = 24/48 (49%), Gaps = 4/48 (8%) Query: 90 YPVEAYEEVSELAKKFLE----KKYISKNGESKLTVMKCIDLSQSSEL 133 YPV YEE E + F+E K +K+G S K ID +S+L Sbjct: 208 YPVPTYEEQKEAIQAFMEGRENKDDDAKSGNSNAGSQKGIDQEAASDL 255Database: nr Posted date: Dec 11, 2001 7:00 AM Number of letters in database: 264,667,755 Number of sequences in database: 837,281 Lambda K H 0.315 0.133 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,388,616 Number of Sequences: 837281 Number of extensions: 1467979 Number of successful extensions: 4932 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 4925 Number of HSP's gapped (non-prelim): 16 length of query: 144 length of database: 264,667,755 effective HSP length: 120 effective length of query: 24 effective length of database: 164,194,035 effective search space: 3940656840 effective search space used: 3940656840 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 63 (28.9 bits)