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Blast 2 Sequences results

PubMed Entrez BLAST OMIM Taxonomy Structure

BLAST 2 SEQUENCES RESULTS VERSION BLASTP 2.2.2 [Dec-14-2001]

Matrix gap open: gap extension:
x_dropoff: expect: wordsize: Filter
Sequence 1 lcl|tmpseq_0putative periplasmic protein [Salmonella typhimurium LT2]Length127 (1 .. 127)
Sequence 2 lcl|tmpseq_1putative exported protein [Yersinia pestis]Length144 (1 .. 144)



2 1

NOTE:The statistics (bitscore and expect value) is calculated based on the size of nr database

Score = 63.2 bits (152), Expect = 1e-10
Identities = 41/114 (35%), Positives = 59/114 (50%), Gaps = 7/114 (6%)





Query: 12  TFSISGM--LVWQPSFAQEALTTQYSQSELLKNWALSHCLALVYKDDVVKNDARATASAY 69
           T SI+ +  L+   + A E    +  Q   L+N+ALS CLA  + D  + ++A +   AY
Sbjct: 25  TLSITSLIFLISFSTLAAEVNQNKVQQKNNLENFALSICLAEGFPDGEINSEAFSAVGAY 84

Query: 70  LEYGKQSVEIYHEIDEIAKKYSGLKY---NGSISSDFNTMKCIDFIHDRELNEL 120
           +E G   VE Y E+ E+AKK+   KY   NG   S    MKCID     EL+ +
Sbjct: 85  VELGAYPVEAYEEVSELAKKFLEKKYISKNG--ESKLTVMKCIDLSQSSELSAI 136
CPU time:     0.02 user secs.	    0.05 sys. secs	    0.07 total secs.

Lambda     K      H
   0.318    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134
Number of Sequences: 0
Number of extensions: 5
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1
length of query: 127
length of database: 277,845,443
effective HSP length: 103
effective length of query: 24
effective length of database: 52,506,266
effective search space: 1260150384
effective search space used: 1260150384
T: 9
A: 40
X1: 16 ( 7.3 bits)
X2: 129 (49.7 bits)
X3: 129 (49.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)