BLASTP 2.2.4 [Aug-26-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1034839769-019813-9281

Query= 
         (492 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,211,778 sequences; 386,724,011 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||S28007  probable ATP-binding protein - Escherichia coli...   930   0.0  
ref|NP_289608.1|  (NC_002655) putative ATP-binding protein o...    33   0.15 
gb|AAL67370.1|AF447814_38  (AF447814) ferric-enterobactin-tr...    31   0.60 
ref|NP_418707.1|  (NC_000913) ATP-binding component of citra...    30   1.8  
ref|NP_290357.1|  (NC_002655) ATP-binding component of high-...    29   2.2  
emb|CAA70589.1|  (Y09439) UUP protein [Escherichia coli]           29   2.2  
ref|NP_415469.1|  (NC_000913) putative ATP-binding component...    29   2.3  
ref|NP_309060.1|  (NC_002695) putative ATP-binding component...    29   2.3  
ref|NP_286824.1|  (NC_002655) putative ATP-binding component...    29   2.3  
ref|NP_418649.1|  (NC_000913) putative ATP-binding component...    29   2.4  
ref|NP_290860.1|  (NC_002655) putative ATP-binding component...    29   2.6  
ref|NP_286315.1|  (NC_002655) ATP-binding component of ferri...    28   4.0  
ref|NP_415120.1|  (NC_000913) ATP-binding component of ferri...    28   4.0  
pir||S16298  ferric enterobactin transport protein fepC - Es...    28   4.0  
gb|AAB40787.1|  (U82598) ferric enterobactin transport ATP-b...    28   4.0  
ref|NP_291002.1|  (NC_002655) probable ATP-dependent proteas...    28   5.7  
ref|NP_313374.1|  (NC_002695) probable ATP-dependent proteas...    28   5.7  
ref|NP_418806.1|  (NC_000913) probable ATP-dependent proteas...    28   5.7  
sp|P39336|YJGL_ECOLI  Hypothetical protein yjgL                    28   6.2  
ref|NP_418674.1|  (NC_000913) orf, hypothetical protein [Esc...    28   6.4  
gb|AAA62051.1|  (L10328) recF (CG Site No. 308) [Escherichia...    28   6.8  
ref|NP_290333.1|  (NC_002655) ssDNA and dsDNA binding, ATP b...    28   6.8  
pdb|1QHL|A  Chain A, Crystal Structure Of The N-Terminal Dom...    28   7.1  
ref|NP_289900.1|  (NC_002655) putative ATP-binding component...    28   7.7  
ref|NP_312230.1|  (NC_002695) putative ATP-binding component...    28   7.9  

Alignments


>pir||S28007 probable ATP-binding protein - Escherichia coli
 emb|CAA78294.1| (Z12832) hypothetical ATP binding protein [Escherichia coli]
          Length = 492

 Score =  930 bits (2404), Expect = 0.0
 Identities = 479/492 (97%), Positives = 479/492 (97%)

Query: 1   MEQNLPSRITKLIKKSESGDFASSYQLYKVFGSKEYGVEPDEKMSDYFKELSAKQLEGGQ 60
           MEQNLPSRITKLIKKSESGDFASSYQLYKVFGSKEYGVEPDEKMSDYFKELSAKQLEGGQ
Sbjct: 1   MEQNLPSRITKLIKKSESGDFASSYQLYKVFGSKEYGVEPDEKMSDYFKELSAKQLEGGQ 60

Query: 61  LRVADIHLENYKGFESLIMDFSMKKNSTILVGNNGCGKSTILDAIQKGXXXXXXXXXXXX 120
           LRVADIHLENYKGFESLIMDFSMKKNSTILVGNNGCGKSTILDAIQKG            
Sbjct: 61  LRVADIHLENYKGFESLIMDFSMKKNSTILVGNNGCGKSTILDAIQKGLTHLSSRLSTRS 120

Query: 121 XNGDGIEKHELRKGQNYASIAINYDYMGIRFPMIIATTEPGYEDRAKSNYSGINELGSIF 180
            NGDGIEKHELRKGQNYASIAINYDYMGIRFPMIIATTEPGYEDRAKSNYSGINELGSIF
Sbjct: 121 HNGDGIEKHELRKGQNYASIAINYDYMGIRFPMIIATTEPGYEDRAKSNYSGINELGSIF 180

Query: 181 KTAHSINPNVSFPLIAMYTVERANDVSTRDIENSEEIKEAQIWDKFKAYNKSLTGKADFK 240
           KTAHSINPNVSFPLIAMYTVERANDVSTRDIENSEEIKEAQIWDKFKAYNKSLTGKADFK
Sbjct: 181 KTAHSINPNVSFPLIAMYTVERANDVSTRDIENSEEIKEAQIWDKFKAYNKSLTGKADFK 240

Query: 241 LFFRWFKELIEIENSDNADITALRAEIRAKEKDLDNPLLKALLAENKNSETTKKLLEDHQ 300
           LFFRWFKELIEIENSDNADITALRAEIRAKEKDLDNPLLKALLAENKNSETTKKLLEDHQ
Sbjct: 241 LFFRWFKELIEIENSDNADITALRAEIRAKEKDLDNPLLKALLAENKNSETTKKLLEDHQ 300

Query: 301 NSLKVLKEKLNSYYSVNSKTLHTVEDAMYSFLPGFSNLKLQRAPLDLIVDKNNVSLSVLQ 360
           NSLKVLKEKLNSYYSVNSKTLHTVEDAMYSFLPGFSNLKLQRAPLDLIVDKNNVSLSVLQ
Sbjct: 301 NSLKVLKEKLNSYYSVNSKTLHTVEDAMYSFLPGFSNLKLQRAPLDLIVDKNNVSLSVLQ 360

Query: 361 LSQGEKTILALIADIARRLTLLNPNSVNPLDGTGIVLIDEIDLHLHPSWQQNIIPRLEKT 420
           LSQGEKTILALIADIARRLTLLNPNSVNPLDGTGIVLIDEIDLHLHPSWQQNIIPRLEKT
Sbjct: 361 LSQGEKTILALIADIARRLTLLNPNSVNPLDGTGIVLIDEIDLHLHPSWQQNIIPRLEKT 420

Query: 421 FKNIQFIVTTHSPQVCHTIDSQNIWLLKNGQKFKAPKELEEQYLLGYWRTCSKLLKGRQR 480
           FKNIQFIVTTHSPQVCHTIDSQNIWLLKNGQKFKAPKELEEQYLLGYWRTCSKLLKGRQR
Sbjct: 421 FKNIQFIVTTHSPQVCHTIDSQNIWLLKNGQKFKAPKELEEQYLLGYWRTCSKLLKGRQR 480

Query: 481 ISTQNSYRNIKI 492
           ISTQNSYRNIKI
Sbjct: 481 ISTQNSYRNIKI 492



>ref|NP_289608.1| (NC_002655) putative ATP-binding protein of ABC transporter family
           [Escherichia coli O157:H7 EDL933]
 ref|NP_311943.1| (NC_002695) putative ABC-type iron-siderophore transport system
           ATP-binding protein [Escherichia coli O157:H7]
 gb|AAG58167.1|AE005532_11 (AE005532) putative ATP-binding protein of ABC transporter family
           [Escherichia coli O157:H7 EDL933]
 dbj|BAB37339.1| (AP002564) putative ABC-type iron-siderophore transport system
           ATP-binding protein [Escherichia coli O157:H7]
          Length = 269

 Score = 33.1 bits (74), Expect = 0.15
 Identities = 13/20 (65%), Positives = 16/20 (80%)

Query: 88  TILVGNNGCGKSTILDAIQK 107
           T+LVG NGCGKST+L  I +
Sbjct: 38  TVLVGANGCGKSTLLSTIAR 57



>gb|AAL67370.1|AF447814_38 (AF447814) ferric-enterobactin-transport protein [Escherichia coli]
          Length = 255

 Score = 31.2 bits (69), Expect = 0.60
 Identities = 12/18 (66%), Positives = 16/18 (88%)

Query: 88  TILVGNNGCGKSTILDAI 105
           T+L+G NGCGKST+L A+
Sbjct: 33  TVLLGPNGCGKSTLLRAL 50



>ref|NP_418707.1| (NC_000913) ATP-binding component of citrate-dependent iron(III)
           transport protein [Escherichia coli K12]
 sp|P15031|FECE_ECOLI Iron(III) dicitrate transport ATP-binding protein fecE
 pir||QRECM3 membrane-bound iron(III) dicitrate transport protein - Escherichia
           coli
 gb|AAA23765.1| (M26397) fecE [Escherichia coli]
 gb|AAA97183.1| (U14003) fecE [Escherichia coli]
 gb|AAC77243.1| (AE000499) ATP-binding component of citrate-dependent iron(III)
           transport protein [Escherichia coli K12]
 gb|AAL08451.1|AF326777_26 (AF326777) ATP-binding protein FecE [Shigella flexneri 2a]
          Length = 255

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/38 (36%), Positives = 23/38 (59%), Gaps = 3/38 (7%)

Query: 73  GFESLIMDFSMKKNS---TILVGNNGCGKSTILDAIQK 107
           G + ++ D S+   +   T L+G NGCGKST+L+   +
Sbjct: 13  GTDKVLNDVSLSLPTGKITALIGPNGCGKSTLLNCFSR 50



>ref|NP_290357.1| (NC_002655) ATP-binding component of high-affinity
           phosphate-specific transport system [Escherichia coli
           O157:H7 EDL933]
 ref|NP_312688.1| (NC_002695) ATP-binding component of high-affinity
           phosphate-specific transport system [Escherichia coli
           O157:H7]
 ref|NP_418181.1| (NC_000913) ATP-binding component of high-affinity
           phosphate-specific transport system [Escherichia coli
           K12]
 sp|P07655|PSTB_ECOLI Phosphate transport ATP-binding protein pstB
 pir||BVECZB ABC-type phosphate transport system ATP-binding protein pstB
           [validated] - Escherichia coli
 emb|CAA26509.1| (X02723) pstB gene product (aa 1-257) [Escherichia coli]
 gb|AAA24381.1| (K01992) peripheral membrane protein B [Escherichia coli]
 gb|AAA62076.1| (L10328) peripheral membrane protein B [Escherichia coli]
 gb|AAC76748.1| (AE000449) ATP-binding component of high-affinity
           phosphate-specific transport system [Escherichia coli
           K12]
 gb|AAG58921.1|AE005603_7 (AE005603) ATP-binding component of high-affinity
           phosphate-specific transport system [Escherichia coli
           O157:H7 EDL933]
 dbj|BAB38084.1| (AP002566) ATP-binding component of high-affinity
           phosphate-specific transport system [Escherichia coli
           O157:H7]
          Length = 257

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 60  QLRVADIHLENYKGFESLIMDFSMKKNSTILVGNNGCGKSTILDAIQK 107
           Q+R  + +   +   +++ +D + K   T  +G +GCGKST+L    K
Sbjct: 12  QVRNLNFYYGKFHALKNINLDIA-KNQVTAFIGPSGCGKSTLLRTFNK 58



>emb|CAA70589.1| (Y09439) UUP protein [Escherichia coli]
          Length = 614

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 13/31 (41%), Positives = 21/31 (66%), Gaps = 3/31 (9%)

Query: 75  ESLIMDFS---MKKNSTILVGNNGCGKSTIL 102
           + L+ DFS   ++ +   L+G NGCGK+T+L
Sbjct: 332 KQLVKDFSAQVLRGDKIALIGPNGCGKTTLL 362



>ref|NP_415469.1| (NC_000913) putative ATP-binding component of a transport system
           [Escherichia coli K12]
 sp|P43672|UUP_ECOLI ABC transporter ATP-binding protein uup
 pir||D64835 ABC-type transport protein uup - Escherichia coli
 gb|AAC74035.1| (AE000197) putative ATP-binding component of a transport system
           [Escherichia coli K12]
 dbj|BAA35707.1| (D90733) Hypothetical protein HI1300 [Escherichia coli]
          Length = 635

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 13/31 (41%), Positives = 21/31 (66%), Gaps = 3/31 (9%)

Query: 75  ESLIMDFS---MKKNSTILVGNNGCGKSTIL 102
           + L+ DFS   ++ +   L+G NGCGK+T+L
Sbjct: 332 KQLVKDFSAQVLRGDKIALIGPNGCGKTTLL 362



>ref|NP_309060.1| (NC_002695) putative ATP-binding component of a transport system
           [Escherichia coli O157:H7]
 dbj|BAB34456.1| (AP002554) putative ATP-binding component of a transport system
           [Escherichia coli O157:H7]
          Length = 635

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 13/31 (41%), Positives = 21/31 (66%), Gaps = 3/31 (9%)

Query: 75  ESLIMDFS---MKKNSTILVGNNGCGKSTIL 102
           + L+ DFS   ++ +   L+G NGCGK+T+L
Sbjct: 332 KQLVKDFSAQVLRGDKIALIGPNGCGKTTLL 362



>ref|NP_286824.1| (NC_002655) putative ATP-binding component of a transport system
           [Escherichia coli O157:H7 EDL933]
 gb|AAG55435.1|AE005285_2 (AE005285) putative ATP-binding component of a transport system
           [Escherichia coli O157:H7 EDL933]
          Length = 635

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 13/31 (41%), Positives = 21/31 (66%), Gaps = 3/31 (9%)

Query: 75  ESLIMDFS---MKKNSTILVGNNGCGKSTIL 102
           + L+ DFS   ++ +   L+G NGCGK+T+L
Sbjct: 332 KQLVKDFSAQVLRGDKIALIGPNGCGKTTLL 362



>ref|NP_418649.1| (NC_000913) putative ATP-binding component of a transport system
           [Escherichia coli K12]
 pir||S56454 hypothetical ABC transporter (ppa-fbp intergenic region) -
           Escherichia coli
 gb|AAA97125.1| (U14003) ORF_o417a [Escherichia coli]
 gb|AAC77185.1| (AE000494) putative ATP-binding component of a transport system
           [Escherichia coli K12]
          Length = 417

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/28 (42%), Positives = 21/28 (74%), Gaps = 1/28 (3%)

Query: 79  MDFSMKKNSTI-LVGNNGCGKSTILDAI 105
           +DFS+++   + L+G NG GKST++ A+
Sbjct: 28  VDFSLRRGEIMALLGENGAGKSTLIKAL 55






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Oct 14, 2002  4:21 AM
  Number of letters in database: 386,423,161
  Number of sequences in database:  1,210,757
  
Lambda     K      H
   0.315    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,280,372
Number of Sequences: 1210757
Number of extensions: 212303
Number of successful extensions: 616
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 591
Number of HSP's gapped (non-prelim): 53
length of query: 492
length of database: 5,838,962
effective HSP length: 98
effective length of query: 394
effective length of database: 3,901,502
effective search space: 1537191788
effective search space used: 1537191788
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)