Motif Scan in a Protein Sequence

result

Query

Protein sequence:

>tr|Q9HXS8 Hypothetical protein PA3713 - Pseudomonas aeruginosa.
MTISRRDFLNGVALTIAAGLTPAEILRAAPGGRYYPPALTGLRGSHPGAFEVAHQMGWEK
KTFDVDHLPIEEEYDLVVVGGGISGLAAAWFYRERHPAARILVIENHDDFGGHAKRNEFQ
AGGRTILGYGGSESLQSPNALYSEDAKHLLKRLGVELKRFETAFDTDFYPGLGLSRAVFF
DKASFGVDKLVSGDPTPMVADEVPRDRLNARSWRAFIGDFPLSREDREALIALYESPRDY
LAGKSVEEKETYLAKTSYRDYLLKNVGLSETSVKYFQGRSNDFSALGADALPAADAYAAG
FPGFDALGLPQPSEEAQAEMDEPYIYHFPDGNASLARLMVRDLIPAVAPGRGMEDIVMAR
FDYSKLDLAGHPVRLRLNSTAVSVRNRAGGVDVGYSRAGRLHRVRGKHCVMACYNMMVPY
LLRDLSEEQAHALSQNVKFPLVYTKVLLRNWQAWKTLGIHEIYAPTLPYSRIKLDFPVDL
GSYRHPRDPRQPIGVHMVYVPTTPNAGMDARTQARVGRSKLYAMSFEQLEKDIRDQLQAM
LGPAGFDHRRDITGITVNRWSHGYSYFMNTLYDDEAESEALMELARSKVGNVAIANSDAA
WDAYAHAAIDQAVRAVRELG

Databases: Prosite profiles (weekly-update)

...scanning for weekly_profile

Result

Summary:

prf:NAD_BINDING

pos. 76 - 106

normalized_score=6.923

Match Location:

query MTISRRDFLNGVALTIAAGLTPAEILRAAPGGRYYPPALTGLRGSHPGAFEVAHQMGWEKKTFDVDHLPIEEEYDLVVVG prf:NAD_BINDING <---- query GGISGLAAAWFYRERHPAARILVIENHDDFGGHAKRNEFQAGGRTILGYGGSESLQSPNALYSEDAKHLLKRLGVELKRF prf:NAD_BINDING -------------------------> query ETAFDTDFYPGLGLSRAVFFDKASFGVDKLVSGDPTPMVADEVPRDRLNARSWRAFIGDFPLSREDREALIALYESPRDY query LAGKSVEEKETYLAKTSYRDYLLKNVGLSETSVKYFQGRSNDFSALGADALPAADAYAAGFPGFDALGLPQPSEEAQAEM query DEPYIYHFPDGNASLARLMVRDLIPAVAPGRGMEDIVMARFDYSKLDLAGHPVRLRLNSTAVSVRNRAGGVDVGYSRAGR query LHRVRGKHCVMACYNMMVPYLLRDLSEEQAHALSQNVKFPLVYTKVLLRNWQAWKTLGIHEIYAPTLPYSRIKLDFPVDL query GSYRHPRDPRQPIGVHMVYVPTTPNAGMDARTQARVGRSKLYAMSFEQLEKDIRDQLQAMLGPAGFDHRRDITGITVNRW query SHGYSYFMNTLYDDEAESEALMELARSKVGNVAIANSDAAWDAYAHAAIDQAVRAVRELG

Prosite profiles (weekly-update):

match detail	match score	motif information
	status: ? pos.: 76-106 raw-score = 340 N-score = 6.923 E-value = 2.5	`prf:NAD_BINDING` NAD binding site. PS50205 QDOC50205 InterPro.

raw text output explanation of !/?

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