Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.RID: 1010156058-23186-30926
Query= gi|13424589|gb|AAK24921.1| ThiJ/PfpI family protein [Caulobacter crescentus] (258 letters)
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 842,570 sequences; 265,492,265 total letters
If you have any problems or questions with the results of this search
please refer to the BLAST FAQsScore E Sequences producing significant alignments: (bits) Value ref|NP_421753.1| (NC_002696) ThiJ/PfpI family protein [Caul... 437 e-122 ref|NP_478168.1| (NC_003240) ThiJ family protein [Nostoc sp... 142 3e-33 ref|NP_420588.1| (NC_002696) ThiJ/PfpI family protein [Caul... 108 5e-23 pir||T35272 hypothetical protein SC5F2A.30 - Streptomyces c... 104 7e-22 ref|NP_334466.1| (NC_002755) 4-methyl-5(B-hydroxyethyl)-thi... 94 1e-18 ref|NP_246443.1| (NC_002663) unknown [Pasteurella multocida... 77 2e-13 pir||T35271 probable transcription regulator - Streptomyces... 77 2e-13 ref|NP_420587.1| (NC_002696) ThiJ/PfpI family protein [Caul... 72 4e-12 ref|NP_214566.1| (NC_000962) hypothetical protein Rv0052 [M... 67 1e-10 ref|NP_519923.1| (NC_003295) PUTATIVE TRANSCRIPTION REGULAT... 67 2e-10 ref|NP_216446.1| (NC_000962) hypothetical protein Rv1930c [... 66 3e-10 ref|NP_349430.1| (NC_003030) Intracellular protease/amidase... 62 5e-09 gb|AAL28218.1| (AY060670) GH09983p [Drosophila melanogaster] 62 5e-09 gb|AAF57086.1| (AE003775) CG1349 gene product [Drosophila m... 60 2e-08 ref|NP_421754.1| (NC_002696) transcriptional regulator, Ara... 58 8e-08 ref|NP_105900.1| (NC_002678) transcription regulator [Mesor... 55 9e-07 emb|CAB93449.1| (AL357591) putative transcriptional regulat... 54 1e-06 emb|CAB56726.1| (AL121600) araC family transcriptional regu... 54 2e-06 ref|NP_232847.1| (NC_002506) conserved hypothetical protein... 53 3e-06 ref|NP_250541.1| (NC_002516) probable transcriptional regul... 48 9e-05 ref|NP_281127.1| (NC_002607) Vng2554h [Halobacterium sp. NR... 47 2e-04 ref|NP_436748.1| (NC_003078) putative transcriptional regul... 43 0.002 emb|CAB94609.1| (AL359214) putative araC-family transcripti... 42 0.004 gb|AAF58316.1| (AE003816) CG6646 gene product [Drosophila m... 40 0.017 ref|NP_188117.1| (NC_003074) 4-methyl-5(b-hydroxyethyl)-thi... 39 0.039 gb|AAL16803.1|AF394958_1 (AF394958) SP22 [Xenopus laevis] 39 0.041 ref|NP_404466.1| (NC_003143) ThiJ/PfpI-family thiamine biog... 39 0.044 dbj|BAA97062.1| (AP000370) emb|CAA17570.1~gene_id:K15M2.13~... 39 0.054 gb|AAH02187.1|AAH02187 (BC002187) Similar to DJ-1 protein [... 38 0.073 ref|XP_056758.1| (XM_056758) RNA-binding protein regulatory... 38 0.077 ref|NP_456496.1| (NC_003198) conserved hypothetical protein... 38 0.079 ref|NP_476484.1| (NM_057143) fertility protein SP22 [Rattus... 38 0.079 ref|NP_009193.1| (NM_007262) RNA-binding protein regulatory... 38 0.079 ref|NP_460887.1| (NC_003197) putative intracellular proteas... 38 0.081 dbj|BAB71781.1| (AB073863) DJ-1 [Cercopithecus aethiops] 38 0.11 emb|CAB61299.1| (AL132991) putative araC-family transcripti... 38 0.12 gb|AAL17945.1| (AY054120) putative transcription activator ... 37 0.14 ref|NP_065594.1| (NM_020569) DJ-1 protein; RNA-binding prot... 37 0.15 ref|NP_213429.1| (NC_000918) protease I [Aquifex aeolicus] ... 37 0.15 ref|NP_419027.1| (NC_002696) ThiJ/PfpI family protein [Caul... 37 0.20 pir||T36485 probable araC-family transcription regulator - ... 37 0.22 ref|NP_436595.1| (NC_003078) putative transcriptional regul... 36 0.37 ref|NP_385790.1| (NC_003047) PUTATIVE TRANSCRIPTION REGULAT... 35 0.47 ref|NP_521615.1| (NC_003296) PROBABLE TRANSCRIPTIONAL REGUL... 35 0.61 ref|NP_175735.1| (NC_003070) hypothetical protein [Arabidop... 35 0.84 ref|NP_212755.1| (NC_001318) 4-methyl-5(b-hydroxyethyl)-thi... 35 0.86 ref|NP_345301.1| (NC_003028) 4-methyl-5(b-hydroxyethyl)-thi... 35 0.86 ref|NP_358307.1| (NC_003098) 4-methyl-5(b-hydroxyethyl)-thi... 35 0.87 pir||S52856 AraC-like protein - Azorhizobium caulinodans >g... 35 0.89 dbj|BAB69222.1| (AB070942) araC family transcriptional regu... 34 1.1Alignments >ref|NP_421753.1| (NC_002696) ThiJ/PfpI family protein [Caulobacter crescentus] gb|AAK24921.1| (AE005960) ThiJ/PfpI family protein [Caulobacter crescentus] Length = 258 Score = 437 bits (1124), Expect = e-122 Identities = 236/258 (91%), Positives = 236/258 (91%) Query: 1 MADALAEIAGTMSFPPAPRRVIFTLDCDGDHRMSQTLQIVIALFPGVTHLDFTGPHQVLC 60 MADALAEIAGTMSFPPAPRRVIFTLDCDGDHRMSQTLQIVIALFPGVTHLDFTGPHQVLC Sbjct: 1 MADALAEIAGTMSFPPAPRRVIFTLDCDGDHRMSQTLQIVIALFPGVTHLDFTGPHQVLC 60 Query: 61 RLPGAKVTVASLAGGEIEADGLVFARLPKLSDIETCDVLIVPGGFGTTQAMGDPDFIAEI 120 RLPGAKVTVASLAGGEIEADGLVFARLPKLSDIETCDVLIVPGGFGTTQAMGDPDFIAEI Sbjct: 61 RLPGAKVTVASLAGGEIEADGLVFARLPKLSDIETCDVLIVPGGFGTTQAMGDPDFIAEI 120 Query: 121 RRLADGARYVCSVCTGSXXXXXXXXXXXXXXXCHWAWRDQLALFGAVPDAARVARDGRYI 180 RRLADGARYVCSVCTGS CHWAWRDQLALFGAVPDAARVARDGRYI Sbjct: 121 RRLADGARYVCSVCTGSLVLAAAGLLKGKRAACHWAWRDQLALFGAVPDAARVARDGRYI 180 Query: 181 TGGGVTAGIDFALTLIAELAGDAVAQGIQLAVEYAPAPPFNSGRPETAPAEVLERITALY 240 TGGGVTAGIDFALTLIAELAGDAVAQGIQLAVEYAPAPPFNSGRPETAPAEVLERITALY Sbjct: 181 TGGGVTAGIDFALTLIAELAGDAVAQGIQLAVEYAPAPPFNSGRPETAPAEVLERITALY 240 Query: 241 GQGMDERVXXXXXXXGVL 258 GQGMDERV GVL Sbjct: 241 GQGMDERVAAAKAAAGVL 258>ref|NP_478168.1| (NC_003240) ThiJ family protein [Nostoc sp. PCC 7120] dbj|BAB77164.1| (AP003602) ThiJ family protein [Nostoc sp. PCC 7120] Length = 226 Score = 142 bits (358), Expect = 3e-33 Identities = 82/200 (41%), Positives = 110/200 (55%), Gaps = 2/200 (1%) Query: 39 IVIALFPGVTHLDFTGPHQVLCRLPGAKVTVASLAGGEIEAD-GLVFARLPKLSDIETCD 97 I + ++P +T LD TGPHQV +P +V + I ++ GL + D Sbjct: 9 IGLVIYPDMTQLDITGPHQVFASMPNTQVLLLWKTLQPIVSNGGLTILPTTTFDECPQLD 68 Query: 98 VLIVPGG-FGTTQAMGDPDFIAEIRRLADGARYVCSVCTGSXXXXXXXXXXXXXXXCHWA 156 VL VPGG FG + M D +A +++ A A+YV +VCTGS HWA Sbjct: 69 VLCVPGGVFGAVEMMQDAQMLAFLQKQAQSAKYVTAVCTGSLILAAAGLLKGYRAASHWA 128 Query: 157 WRDQLALFGAVPDAARVARDGRYITGGGVTAGIDFALTLIAELAGDAVAQGIQLAVEYAP 216 +R+QL L G RV D ITGGGVTAGIDFALT+ A L GD A+ I+L +EY P Sbjct: 129 FREQLRLMGVEVSNERVVVDSNRITGGGVTAGIDFALTIAAMLCGDYTAKFIELMLEYNP 188 Query: 217 APPFNSGRPETAPAEVLERI 236 APPF G PE AP+ +++ + Sbjct: 189 APPFGVGSPEKAPSSLVQAV 208>ref|NP_420588.1| (NC_002696) ThiJ/PfpI family protein [Caulobacter crescentus] gb|AAK23756.1| (AE005852) ThiJ/PfpI family protein [Caulobacter crescentus] Length = 267 Score = 108 bits (270), Expect = 5e-23 Identities = 80/199 (40%), Positives = 101/199 (50%), Gaps = 9/199 (4%) Query: 32 RMSQTLQIVIALFPGVTHLDFTGPHQVLCRLPGAKVTV----ASLAGGEIEAD-GLVFAR 86 RM Q+ + L+PG T LD GPH + GAKV + ASLA + +D GL A Sbjct: 41 RMHGDEQVAMLLYPGFTALDLVGPHYFFACMMGAKVHLVTNQASLA--PVASDLGLAIAP 98 Query: 87 LPKLSDIET-CDVLIVPGGF-GTTQAMGDPDFIAEIRRLADGARYVCSVCTGSXXXXXXX 144 L+D +L PGG GT A DP +A + A A+ V SVCTGS Sbjct: 99 TTTLADCPADLTLLFCPGGTNGTIAAASDPATLAFLADRAVRAQCVTSVCTGSVILGAAG 158 Query: 145 XXXXXXXXCHWAWRDQLALFGAVPDAARVARDGRYITGGGVTAGIDFALTLIAELAGDAV 204 HW R+QL+ FGA P RV RDG+ ITG GV+AG+D L ++ L G Sbjct: 159 LLKGRRATSHWVAREQLSRFGATPVDERVVRDGKIITGAGVSAGLDLGLAVVEILRGRPY 218 Query: 205 AQGIQLAVEYAPAPPFNSG 223 A + L EY+PAPPF G Sbjct: 219 AAALMLQAEYSPAPPFPGG 237>pir||T35272 hypothetical protein SC5F2A.30 - Streptomyces coelicolor emb|CAB40697.1| (AL049587) hypothetical protein [Streptomyces coelicolor A3(2)] Length = 211 Score = 104 bits (260), Expect = 7e-22 Identities = 71/200 (35%), Positives = 104/200 (51%), Gaps = 2/200 (1%) Query: 37 LQIVIALFPGVTHLDFTGPHQVLCRLPGAKVTVASLAGGEIEAD--GLVFARLPKLSDIE 94 ++ I LF T LD GP++ + R+PGA+ + G + D L L+D+ Sbjct: 1 MRTAIVLFDRFTALDAVGPYETMSRIPGAETVFVAERTGPVRNDTGSLALTADRTLADVP 60 Query: 95 TCDVLIVPGGFGTTQAMGDPDFIAEIRRLADGARYVCSVCTGSXXXXXXXXXXXXXXXCH 154 DV++VPGG G MG+ + +R + + SVC+GS H Sbjct: 61 DPDVVVVPGGPGQDAQMGNETLLDWLRAADAASTWTTSVCSGSLLLAAAGLLSGRRATSH 120 Query: 155 WAWRDQLALFGAVPDAARVARDGRYITGGGVTAGIDFALTLIAELAGDAVAQGIQLAVEY 214 W D L +GA P RV DG+Y+T GV++GID LTL+ +AGD AQ +QL EY Sbjct: 121 WLALDLLKQYGAEPTGERVVTDGKYVTAAGVSSGIDMGLTLVGRIAGDEHAQAVQLLTEY 180 Query: 215 APAPPFNSGRPETAPAEVLE 234 P PP+++G P+ APA ++E Sbjct: 181 DPQPPYDAGSPDKAPAYLVE 200>ref|NP_334466.1| (NC_002755) 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme, putative [Mycobacterium tuberculosis CDC1551] gb|AAK44280.1| (AE006918) 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme, putative [Mycobacterium tuberculosis CDC1551] Length = 212 Score = 94.0 bits (232), Expect = 1e-18 Identities = 63/191 (32%), Positives = 84/191 (42%), Gaps = 4/191 (2%) Query: 37 LQIVIALFPGVTHLDFTGPHQVLCRLPGAKVTVASLAGGEIEADGLVFARL--PKLSDIE 94 +Q+ IALFPG T LD GP +VL R+P V GE+ +D + L ++ Sbjct: 1 MQVAIALFPGNTALDAVGPFEVLQRVPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELT 60 Query: 95 TCDVLIVPGGFGTTQAMGDPDFIAEIRRLADGARYVCSVCTGSXXXXXXXXXXXXXXXCH 154 DV+I PGG GT + D + +R SVCTG H Sbjct: 61 RPDVVIFPGGIGTRTLIHDQTVLDWVREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTH 120 Query: 155 WAWRDQLALFGA--VPDAARVARDGRYITGGGVTAGIDFALTLIAELAGDAVAQGIQLAV 212 W +D GA VP R IT GV++GID L L+ L A+ QL + Sbjct: 121 WRVQDLFNSLGARYVPQRVVEHLPERVITAAGVSSGIDMGLRLVELLVSREAAEASQLMI 180 Query: 213 EYAPAPPFNSG 223 EY P PP ++G Sbjct: 181 EYDPQPPVDAG 191>ref|NP_246443.1| (NC_002663) unknown [Pasteurella multocida] gb|AAK03588.1| (AE006187) unknown [Pasteurella multocida] Length = 207 Score = 76.6 bits (187), Expect = 2e-13 Identities = 62/193 (32%), Positives = 86/193 (44%), Gaps = 27/193 (13%) Query: 37 LQIVIALFPGVTHLDFTGPHQVLCRLPGAKVTVASLAGGEIEA------DGLVFARLPKL 90 + I LF LD GP + L RLP ++ S GG I++ D + LP+ Sbjct: 1 MNIYCLLFDDYETLDLMGPIEFLFRLPNVQLHYISKQGGLIKSYQGFKTDTVSITCLPEK 60 Query: 91 SDIETCDVLIVPGGFGTTQAMGDPDFIAEIRRLADGARYVCSVCTGSXXXXXXXXXXXXX 150 S +L++PGG GT Q + D F+ + +L D A + SVCTGS Sbjct: 61 S------ILLIPGGQGTRQLVKDMPFLTWLTQLVDEAEFCLSVCTGSALLAATKQLDG-- 112 Query: 151 XXCHWAWRDQLALFGAV----PD-----AARVARDGRYITGGGVTAGIDFALTLIAELAG 201 WA ++ A F V PD AR RDG++ + GVTAG+D L I + Sbjct: 113 ---KWATSNKFA-FEWVRQINPDVKWKAVARWVRDGKFYSSSGVTAGMDMTLGFIHDHYS 168 Query: 202 DAVAQGIQLAVEY 214 +AQ I EY Sbjct: 169 QGLAQQIANQTEY 181>pir||T35271 probable transcription regulator - Streptomyces coelicolor emb|CAB40696.1| (AL049587) putative transcriptional regulator [Streptomyces coelicolor A3(2)] Length = 325 Score = 76.6 bits (187), Expect = 2e-13 Identities = 64/177 (36%), Positives = 81/177 (45%), Gaps = 13/177 (7%) Query: 39 IVIALFPGVTHLDFTGPHQVLC----RLPGA-KVTVASLAGGEIE-ADGLVFARLPKLSD 92 +++ LF GV LD TGP +V PG ++ ASL G + + GL L Sbjct: 12 VLVLLFDGVQSLDVTGPVEVFAGAEQHTPGTYRIRTASLDGAPVRTSSGLHLVPDQALGT 71 Query: 93 IETCDVLIVPGGFGTTQAMGDPDFIAEIRRLADGARYVCSVCTGSXXXXXXXXXXXXXXX 152 D L+VPGG GT DP +RR GAR + SVCTG+ Sbjct: 72 GPQPDTLVVPGGRGTRNP--DPRLTEWLRRHGTGARRLVSVCTGAILLARAGLLDGRRVT 129 Query: 153 CHWAWRDQLA----LFGAVPDAARVARDGRYITGGGVTAGIDFALTLIAELAGDAVA 205 HWA+ D+LA PD + RDG T GVT+GID AL L+ E G VA Sbjct: 130 THWAYSDRLARDHPAVEVDPDPIYI-RDGNVATSAGVTSGIDLALALVEEDLGRDVA 185>ref|NP_420587.1| (NC_002696) ThiJ/PfpI family protein [Caulobacter crescentus] gb|AAK23755.1| (AE005852) ThiJ/PfpI family protein [Caulobacter crescentus] Length = 418 Score = 72.0 bits (175), Expect = 4e-12 Identities = 63/196 (32%), Positives = 85/196 (43%), Gaps = 28/196 (14%) Query: 35 QTLQIVIALFPGVTHLDFTGPHQVLCRLPGAKVTVASLAGGEIE-ADGLV------FARL 87 QT + I L+PG LD GP ++ PG +V + S GG + A G V FA Sbjct: 221 QTRTVGIVLYPGFEVLDVFGPVEMWANTPGLEVVMISQDGGPVRSAQGAVVQADYSFATA 280 Query: 88 PKLSDIETCDVLIVPGGFGTTQAMGDPDFIAEIRRLADGARYVCSVCTGSXXXXXXXXXX 147 PKL+ +++VPGG GT + +P +A ++ + SVCTGS Sbjct: 281 PKLA------IMMVPGGAGTYGQLENPALMAFLKARDAETEFTTSVCTGSALLAKAGLLK 334 Query: 148 XXXXXCHWAWRDQLALFGAVPDA---------ARVARDGRYITGGGVTAGIDFALTLIAE 198 A F D AR DG+Y T GV+AG D AL LIA Sbjct: 335 GRKAT------SNKAFFSLAVDQDPSVTWMKRARWVEDGKYFTSSGVSAGTDMALGLIAR 388 Query: 199 LAGDAVAQGIQLAVEY 214 L A AQ + ++EY Sbjct: 389 LTTKADAQALARSLEY 404>ref|NP_214566.1| (NC_000962) hypothetical protein Rv0052 [Mycobacterium tuberculosis H37Rv] pir||D70913 hypothetical protein Rv0052 - Mycobacterium tuberculosis (strain H37RV) emb|CAB02530.1| (Z80775) hypothetical protein Rv0052 [Mycobacterium tuberculosis H37Rv] Length = 187 Score = 67.4 bits (163), Expect = 1e-10 Identities = 48/166 (28%), Positives = 66/166 (38%), Gaps = 4/166 (2%) Query: 62 LPGAKVTVASLAGGEIEADGLVFARL--PKLSDIETCDVLIVPGGFGTTQAMGDPDFIAE 119 +P V GE+ +D + L ++ DV+I PGG GT + D + Sbjct: 1 MPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60 Query: 120 IRRLADGARYVCSVCTGSXXXXXXXXXXXXXXXCHWAWRDQLALFGA--VPDAARVARDG 177 +R SVCTG HW +D GA VP Sbjct: 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120 Query: 178 RYITGGGVTAGIDFALTLIAELAGDAVAQGIQLAVEYAPAPPFNSG 223 R IT GV++GID L L+ L A+ QL +EY P PP ++G Sbjct: 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAG 166>ref|NP_519923.1| (NC_003295) PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum] emb|CAD15504.1| (AL646066) PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum] Length = 224 Score = 67.0 bits (162), Expect = 2e-10 Identities = 58/201 (28%), Positives = 91/201 (44%), Gaps = 19/201 (9%) Query: 39 IVIALFPGVTHLDFTGPHQVLCRLPG---AKVTVASLAGGEIEA----DGLVFARLPKLS 91 I I ++PGV LD P ++ + A+ T +LA + DGL + + Sbjct: 10 ITIPIYPGVDLLDVAAPVELFSWMADAWKARATTITLAAEHLTPLKTRDGLTLTPQRQFA 69 Query: 92 DIETC-------DVLIVPGGFGTT--QAMGDPDFIAEIRRLADGARYVCSVCTGSXXXXX 142 D +L VPGG + M ++ ++ + GA +V SVC G+ Sbjct: 70 DYADAAAPQPQTHLLWVPGGAPDVLRKLMRGGPYLDFLKAQSAGADHVSSVCEGALLLAA 129 Query: 143 XXXXXXXXXXCHWAWRDQLALFGAVPDAARVAR---DGRYITGGGVTAGIDFALTLIAEL 199 HWA+ L F A+ A R DG ITGGG+++G+D AL ++A + Sbjct: 130 AGLLDGYRATTHWAFIPCLQQFPAIKVAEGFPRYVIDGNRITGGGISSGLDEALAIVARV 189 Query: 200 AGDAVAQGIQLAVEYAPAPPF 220 AG +A+ +Q+ +Y P PPF Sbjct: 190 AGQDIAKHVQMITQYFPDPPF 210Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Jan 2, 2002 8:11 AM Number of letters in database: 265,492,265 Number of sequences in database: 842,570 Lambda K H 0.323 0.141 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 128,838,954 Number of Sequences: 842570 Number of extensions: 5118693 Number of successful extensions: 10402 Number of sequences better than 10.0: 87 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 52 Number of HSP's that attempted gapping in prelim test: 10306 Number of HSP's gapped (non-prelim): 94 length of query: 258 length of database: 265,492,265 effective HSP length: 117 effective length of query: 141 effective length of database: 166,911,575 effective search space: 23534532075 effective search space used: 23534532075 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 69 (31.2 bits)