STRING Search Tool for Recurring Instances of Neighbouring Genes

Reference

Snel, B., Lehmann, G., Bork, P., and Huynen, M. A. (2000) STRING: A web-server to retrieve and display the repeatedly occurring neighbourhood of a gene. Nucleic Acids Res. 28:3442-3444

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Results found using as seed gene "CA0978", which is orthologous to "PS3713", where "PS3713" has an 100% match in blast with the query sequence. These results can also be viewed in textformat. And here you can see the blast output. Result after 1 iteration(s); it's not converged.

The putative functions of each orthologous family can be looked up in this color code page and the meaning of the symbols in this symbol description.

Co-occurrences in potential operons of the seed gene with other genes:

Seed gene		Gene 2		# together in same gene cluster
protoporphyrinogen oxidase			uroporphyrinogen decarboxylase	9 / 4
protoporphyrinogen oxidase			ferrochelatase related protein	3 / 2

A graphical representation of the number of pairwise co-occurrences of all genes within this set.

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Comments and suggestions to: Berend Snel or Gerrit Lehmann