Bork GroupSTRING Search Tool for Recurring Instances of Neighbouring GenesEMBL
Reference Snel, B., Lehmann, G., Bork, P., and Huynen, M. A. (2000) STRING: A web-server to retrieve and display the repeatedly occurring neighbourhood of a gene. Nucleic Acids Res. 28:3442-3444

Results found using as seed gene the query gene "PS5451". These results can also be viewed in textformat. Result after 1 iteration(s); it's not converged.

The putative functions of each orthologous family can be looked up in this color code page and the meaning of the symbols in this symbol description.

Co-occurrences in potential operons of the seed gene with other genes:
Seed gene Gene 2 # together in same gene cluster
XF2567 ABC transporter permease protein    XF2568 ABC transporter ATP-binding protein21 / 15
XF2567 ABC transporter permease protein    XF0609 GDP-mannose 4,6 dehydratase4 / 4
XF2567 ABC transporter permease protein    rgpFc conserved hypothetical protein - possibly involved in3 / 3
XF2567 ABC transporter permease protein    rgpEc putative glycosyltransferase - possibly involved in c3 / 3
XF2567 ABC transporter permease protein    rgpBc putative rhamnosyltransferase - possibly involved in 3 / 3
XF2567 ABC transporter permease protein     XF0608 mannosyltransferase2 / 2
XF2567 ABC transporter permease protein    rmlD putative dTDP-4-keto-L-rhamnose reductase2 / 2
XF2567 ABC transporter permease protein    rgpAc conserved hypothetical protein - possibly involved in2 / 2
XF2567 ABC transporter permease protein    SPy0798 conserved hypothetical protein2 / 2
XF2567 ABC transporter permease protein    SPy0794 putative glycosyl transferase2 / 2
XF2567 ABC transporter permease protein    SPy0796 hypothetical protein2 / 2
XF2567 ABC transporter permease protein    tagF teichoic acid biosynthesis protein F2 / 2
XF2567 ABC transporter permease protein    mannose-1-phosphate guanylyltransferase1 / 1
XF2567 ABC transporter permease protein    perosamine synthase1 / 1
XF2567 ABC transporter permease protein    XF0610 UDP-glucose 4-epimerase1 / 1
XF2567 ABC transporter permease protein    wbpY glycosyltransferase WbpY1 / 1


A graphical representation of the number of pairwise co-occurrences of all genes within this set.


START PAGE    DOCUMENTATION    GLOSSARY    


Biocomputing Unit  Bork Group  Search EMBL  EMBL  

Comments and suggestions to: Berend Snel or Gerrit Lehmann