Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.RID: 1011197888-14611-27251
Query= 20C2 (244 letters)
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 849,860 sequences; 267,814,640 total letters
If you have any problems or questions with the results of this search
please refer to the BLAST FAQsScore E Sequences producing significant alignments: (bits) Value dbj|BAA28324.1| (AB010150) integral membrane component of A... 340 3e-93 gb|AAF04380.1|AF189151_3 (AF189151) Wzm [Klebsiella pneumon... 281 1e-75 dbj|BAA28335.1| (AB010294) integral membrane component of A... 275 6e-74 pir||I76772 integral membrane component of ABC-transporter ... 275 8e-74 dbj|BAA28331.1| (AB010293) integral membrane component of A... 275 1e-73 dbj|BAA28339.1| (AB010295) integral membrane component of A... 275 1e-73 ref|NP_254138.1| (NC_002516) membrane subunit of A-band LPS... 217 3e-56 gb|AAC16667.1| (U63722) membrane-spanning domain MSD [Pseud... 216 6e-56 gb|AAK53482.1|AF204145_23 (AF204145) ABC transporter [Xanth... 150 4e-36 ref|NP_213745.1| (NC_000918) ABC transporter (ABC-2 subfami... 113 6e-25 ref|NP_348945.1| (NC_003030) Polysaccharide ABC transporter... 107 3e-23 pir||T31089 probable ABC transporter system integral membra... 102 1e-21 sp|Q50862|RFBA_MYXXA O-ANTIGEN EXPORT SYSTEM PERMEASE PROTE... 92 1e-18 sp|Q48475|RFA1_KLEPN O-ANTIGEN EXPORT SYSTEM PERMEASE PROTE... 87 4e-17 sp|Q48478|RFA2_KLEPN O-ANTIGEN EXPORT SYSTEM PERMEASE PROTE... 85 2e-16 emb|CAA07649.1| (AJ007747) ABC transporter integral membran... 82 1e-15 gb|AAK27395.1| (AY028370) putative ABC-2 transporter integr... 82 2e-15 gb|AAD05458.1| (AF064070) putative ABC-2 transporter integr... 81 3e-15 gb|AAC98414.1| (L34166) similar to kpsM (E. coli), bexB (H.... 80 4e-15 ref|NP_251368.1| (NC_002516) probable permease of ABC-2 tra... 79 2e-14 dbj|BAA82536.1| (AB030032) ABC transporter [Actinobacillus ... 78 3e-14 emb|CAB65193.1| (AJ007311) Wzm protein [Legionella pneumoph... 74 3e-13 pir||T00106 ABC-type transport protein 1 - Actinobacillus a... 71 2e-12 dbj|BAA19637.1| (AB002668) unnamed protein product [Actinob... 70 4e-12 ref|NP_440216.1| (NC_000911) ABC transporter [Synechocystis... 65 1e-10 dbj|BAB03202.1| (AB046360) putative ABC-transporter [Actino... 65 2e-10 gb|AAG49407.1| (AF213680) ABC transporter integral membrane... 64 4e-10 ref|NP_269006.1| (NC_002737) putative ABC-transporter (perm... 64 4e-10 gb|AAK51164.1|AF182824_1 (AF182824) ABC-transporter integra... 64 5e-10 dbj|BAA95014.1| (AB033232) TagG homolog [Staphylococcus aur... 61 2e-09 gb|AAC35925.1| (AF071085) putative ABC transporter permease... 60 7e-09 ref|NP_301208.1| (NC_002677) putative ABC transporter compo... 59 2e-08 emb|CAC18732.1| (AL499570) putative ABC transporter integra... 58 2e-08 ref|NP_244527.1| (NC_002570) teichoic acid ABC transporter ... 58 3e-08 ref|NP_373848.1| (NC_002745) teichoic acid translocation pe... 57 4e-08 ref|NP_371162.1| (NC_002758) teichoic acid translocation pe... 57 7e-08 ref|NP_266358.1| (NC_002662) polysaccharide ABC transporter... 53 8e-07 ref|NP_391452.1| (NC_000964) permease [Bacillus subtilis] >... 52 1e-06 pir||T00088 ABC-type transport protein rgpCc - Streptococcu... 52 1e-06 ref|NP_464599.1| (NC_003210) highly similar to teichoic aci... 52 2e-06 ref|NP_359641.1| (NC_003103) O-antigen export system permea... 52 2e-06 pir||T35397 probable ABC transporter membrane component - S... 51 2e-06 ref|NP_540332.1| (NC_003317) O-ANTIGEN EXPORT SYSTEM PERMEA... 51 3e-06 ref|NP_218300.1| (NC_000962) hypothetical protein Rv3783 [M... 51 3e-06 gb|AAC98614.1| (AF047478) ABC transporter [Brucella meliten... 50 4e-06 ref|NP_299844.1| (NC_002488) ABC transporter permease prote... 50 6e-06 ref|NP_470399.1| (NC_003212) highly similar to teichoic aci... 49 2e-05 ref|NP_488525.1| (NC_003272) permease protein of ABC transp... 49 2e-05 ref|NP_220400.1| (NC_000963) O-ANTIGEN EXPORT SYSTEM PERMEA... 49 2e-05 ref|NP_441362.1| (NC_000911) polysialic acid transport prot... 49 2e-05Alignments >dbj|BAA28324.1| (AB010150) integral membrane component of ABC-transporter [Escherichia coli] Length = 264 Score = 340 bits (871), Expect = 3e-93 Identities = 200/260 (76%), Positives = 216/260 (82%), Gaps = 16/260 (6%) Query: 1 MKEMLLAIYGYRGFIWSSIKRDFQS-YQTSMLGALWLVLQPLAMILVYTLVFSEVMKARM 59 M+++L IY YRGFIWSS+KRDFQ+ YQTSMLGALWLVLQPL+MILVYTLVFSEVMKARM Sbjct: 1 MRDLLTTIYRYRGFIWSSVKRDFQARYQTSMLGALWLVLQPLSMILVYTLVFSEVMKARM 60 Query: 60 PDNSGPFAYSIYLCSGVLTWGLFTEILDKSQSVFITNANLIKKLSFPKICLPVIVTASAV 119 PDN+G FAYSIYLCSGVLTWGLFTE+LDK QSVFI NANLIKKLSFPKICLP+IVT SAV Sbjct: 61 PDNTGSFAYSIYLCSGVLTWGLFTEMLDKGQSVFINNANLIKKLSFPKICLPIIVTLSAV 120 Query: 120 F---------------TGNFPGVLFFSVLPVLALQVLFTVGLGMTLGVMNVFFRDVGQFV 164 TGNFPG LF SV+PVL LQ+LF GLGM LGVMNVFFRDVGQ V Sbjct: 121 LNFAIIFSLFLIFIIVTGNFPGWLFLSVIPVLLLQILFAGGLGMILGVMNVFFRDVGQLV 180 Query: 165 GVLLQFWFWFTPIVYVLNSLPEWARTSLMYNPMARVMQAYQSIFAYQQQPNWYSLWPVLV 224 GV LQFWFWFTPIVYVLNSLP WA+ +MYNPM R+MQ+YQSIFAY PNWYSLWPVL Sbjct: 181 GVALQFWFWFTPIVYVLNSLPAWAKNLMMYNPMTRIMQSYQSIFAYHLAPNWYSLWPVLA 240 Query: 225 LAIIFCAFGMRLFRKHAAGM 244 LAIIFC G R+FRKHAA M Sbjct: 241 LAIIFCVIGFRMFRKHAADM 260>gb|AAF04380.1|AF189151_3 (AF189151) Wzm [Klebsiella pneumoniae] Length = 229 Score = 281 bits (719), Expect = 1e-75 Identities = 163/208 (78%), Positives = 172/208 (82%), Gaps = 15/208 (7%) Query: 50 VFSEVMKARMPDNSGPFAYSIYLCSGVLTWGLFTEILDKSQSVFITNANLIKKLSFPKIC 109 VFSEVMKARMPDN+GPFAYSIYLCSGVLTWGLFTE+LDK QSVFI NANLIKKLSFPKIC Sbjct: 16 VFSEVMKARMPDNTGPFAYSIYLCSGVLTWGLFTEMLDKGQSVFINNANLIKKLSFPKIC 75 Query: 110 LPVIVTASAVF---------------TGNFPGVLFFSVLPVLALQVLFTVGLGMTLGVMN 154 LP+IVT SAV TGNFPG LFFSV+PVL LQ+LF GLGM LGVMN Sbjct: 76 LPIIVTLSAVLNFAIIFSLFLIFIIVTGNFPGWLFFSVIPVLLLQILFAGGLGMILGVMN 135 Query: 155 VFFRDVGQFVGVLLQFWFWFTPIVYVLNSLPEWARTSLMYNPMARVMQAYQSIFAYQQQP 214 VFFRDVGQ VGV LQFWFWFTPIVYVLNSLP WA+ L+YNPM RVMQ+YQSIFAY Q P Sbjct: 136 VFFRDVGQLVGVALQFWFWFTPIVYVLNSLPAWAKNLLLYNPMTRVMQSYQSIFAYHQAP 195 Query: 215 NWYSLWPVLVLAIIFCAFGMRLFRKHAA 242 NWYSLWPVL LAIIFC G R+FRKHAA Sbjct: 196 NWYSLWPVLALAIIFCVIGFRMFRKHAA 223>dbj|BAA28335.1| (AB010294) integral membrane component of ABC-transporter [Escherichia coli] Length = 261 Score = 275 bits (704), Expect = 6e-74 Identities = 161/255 (63%), Positives = 196/255 (76%), Gaps = 16/255 (6%) Query: 4 MLLAIYGYRGFIWSSIKRDFQS-YQTSMLGALWLVLQPLAMILVYTLVFSEVMKARMPDN 62 M AIY YRGFI S+KRDFQS YQTS LGA WL+LQP+AMI VYTL+FSE+M+AR+ Sbjct: 1 MFSAIYRYRGFIIDSVKRDFQSRYQTSFLGAAWLILQPIAMISVYTLIFSELMRARLAGM 60 Query: 63 SGPFAYSIYLCSGVLTWGLFTEILDKSQSVFITNANLIKKLSFPKICLPVIVTASA---- 118 GPFAYSIYLCSGVLTWGLFTE L+ +VF+TNAN++KKLSFP+ICLP+IVTASA Sbjct: 61 DGPFAYSIYLCSGVLTWGLFTETLNSLVNVFLTNANILKKLSFPRICLPIIVTASAFINF 120 Query: 119 -----------VFTGNFPGVLFFSVLPVLALQVLFTVGLGMTLGVMNVFFRDVGQFVGVL 167 + TGNFPG++FF ++PVL +Q+LFT+GLG+ LGV+NVF RDVGQFV +L Sbjct: 121 LIIFGLFVLFLIVTGNFPGMIFFEIIPVLIVQMLFTLGLGIILGVLNVFVRDVGQFVNIL 180 Query: 168 LQFWFWFTPIVYVLNSLPEWARTSLMYNPMARVMQAYQSIFAYQQQPNWYSLWPVLVLAI 227 LQFWFWFTPIVYV +LPEW L YNPMA ++ +YQ++ Y Q PNW +L PV VL++ Sbjct: 181 LQFWFWFTPIVYVSKTLPEWVSGLLAYNPMATIIGSYQNVMLYHQSPNWLALLPVAVLSV 240 Query: 228 IFCAFGMRLFRKHAA 242 I F RLF+KHAA Sbjct: 241 ILFLFAWRLFKKHAA 255>pir||I76772 integral membrane component of ABC-transporter - Escherichia coli dbj|BAA07747.1| (D43637) putative integral membrane component of ABC-transporter [Escherichia coli] Length = 261 Score = 275 bits (703), Expect = 8e-74 Identities = 161/255 (63%), Positives = 195/255 (76%), Gaps = 16/255 (6%) Query: 4 MLLAIYGYRGFIWSSIKRDFQS-YQTSMLGALWLVLQPLAMILVYTLVFSEVMKARMPDN 62 M AIY YRGFI S+KRDFQS YQTS LGA WL+LQP+AMI VYTL+FSE+M+AR+ Sbjct: 1 MFSAIYRYRGFIIDSVKRDFQSRYQTSFLGAAWLILQPIAMISVYTLIFSELMRARLAGM 60 Query: 63 SGPFAYSIYLCSGVLTWGLFTEILDKSQSVFITNANLIKKLSFPKICLPVIVTASA---- 118 GPFAYSIYLCSGVLTWGLFTE L +VF+TNAN++KKLSFP+ICLP+IVTASA Sbjct: 61 DGPFAYSIYLCSGVLTWGLFTETLGNLVNVFLTNANILKKLSFPRICLPIIVTASAFINF 120 Query: 119 -----------VFTGNFPGVLFFSVLPVLALQVLFTVGLGMTLGVMNVFFRDVGQFVGVL 167 + TGNFPG++FF ++PVL +Q+LFT+GLG+ LGV+NVF RDVGQFV +L Sbjct: 121 LIIFGLFVLFLIVTGNFPGMIFFEIIPVLIVQMLFTLGLGIILGVLNVFVRDVGQFVNIL 180 Query: 168 LQFWFWFTPIVYVLNSLPEWARTSLMYNPMARVMQAYQSIFAYQQQPNWYSLWPVLVLAI 227 LQFWFWFTPIVYV +LPEW L YNPMA ++ +YQ++ Y Q PNW +L PV VL++ Sbjct: 181 LQFWFWFTPIVYVSKTLPEWVSGLLAYNPMATIIGSYQNVMLYHQSPNWLALLPVAVLSV 240 Query: 228 IFCAFGMRLFRKHAA 242 I F RLF+KHAA Sbjct: 241 ILFLFAWRLFKKHAA 255>dbj|BAA28331.1| (AB010293) integral membrane component of ABC-transporter [Escherichia coli] Length = 261 Score = 275 bits (702), Expect = 1e-73 Identities = 160/255 (62%), Positives = 197/255 (76%), Gaps = 16/255 (6%) Query: 4 MLLAIYGYRGFIWSSIKRDFQS-YQTSMLGALWLVLQPLAMILVYTLVFSEVMKARMPDN 62 M AIY YRGFI S+KRDFQS YQTS LGA WL+LQP+AMI VYTL+FSE+M+AR+ Sbjct: 1 MFSAIYRYRGFIIDSVKRDFQSRYQTSFLGAAWLILQPIAMISVYTLIFSELMRARLAGM 60 Query: 63 SGPFAYSIYLCSGVLTWGLFTEILDKSQSVFITNANLIKKLSFPKICLPVIVTASA---- 118 GPFAYSIYLCSGVLTWGLFTE+L+ +VF+TNAN++KKLSFP+ICLP+IVTASA Sbjct: 61 DGPFAYSIYLCSGVLTWGLFTEMLNSLVNVFLTNANILKKLSFPRICLPIIVTASAFINF 120 Query: 119 -----------VFTGNFPGVLFFSVLPVLALQVLFTVGLGMTLGVMNVFFRDVGQFVGVL 167 + TGNFPG++FF ++PVL +Q+LFT+GLG+ LGV+NVF RDVGQFV +L Sbjct: 121 LIIFGLFVLFLIVTGNFPGMIFFEIIPVLIVQMLFTLGLGIILGVLNVFVRDVGQFVNIL 180 Query: 168 LQFWFWFTPIVYVLNSLPEWARTSLMYNPMARVMQAYQSIFAYQQQPNWYSLWPVLVLAI 227 LQFWFWFTPIVYV +LPEW L YNPMA ++ +YQ++ Y Q PNW +L PV V+++ Sbjct: 181 LQFWFWFTPIVYVSKTLPEWVSGLLAYNPMATIIGSYQNVMLYHQSPNWMALLPVTVVSV 240 Query: 228 IFCAFGMRLFRKHAA 242 I F RLF+KHAA Sbjct: 241 ILFLFAWRLFKKHAA 255>dbj|BAA28339.1| (AB010295) integral membrane component of ABC-transporter [Klebsiella pneumoniae] dbj|BAA28343.1| (AB010296) integral membrane component of ABC-transporter [Klebsiella pneumoniae] Length = 261 Score = 275 bits (702), Expect = 1e-73 Identities = 161/255 (63%), Positives = 195/255 (76%), Gaps = 16/255 (6%) Query: 4 MLLAIYGYRGFIWSSIKRDFQS-YQTSMLGALWLVLQPLAMILVYTLVFSEVMKARMPDN 62 M AIY YRGFI S+KRDFQS YQTS LGA WL+LQP+AMI VYTL+FSE+M+AR+ Sbjct: 1 MFSAIYRYRGFIIDSVKRDFQSRYQTSFLGAAWLILQPIAMISVYTLIFSELMRARLAGM 60 Query: 63 SGPFAYSIYLCSGVLTWGLFTEILDKSQSVFITNANLIKKLSFPKICLPVIVTASA---- 118 GPFAYSIYLCSGVLTWGLFTE L +VF+TNAN++KKLSFP+ICLP+IVTASA Sbjct: 61 DGPFAYSIYLCSGVLTWGLFTETLGNLVNVFLTNANILKKLSFPRICLPIIVTASAFINF 120 Query: 119 -----------VFTGNFPGVLFFSVLPVLALQVLFTVGLGMTLGVMNVFFRDVGQFVGVL 167 + TGNFPG++FF ++PVL +Q+LFT+GLG+ LGV+NVF RDVGQFV +L Sbjct: 121 LIIFGLFVLFLIVTGNFPGMIFFEIIPVLIVQMLFTLGLGIILGVLNVFVRDVGQFVNIL 180 Query: 168 LQFWFWFTPIVYVLNSLPEWARTSLMYNPMARVMQAYQSIFAYQQQPNWYSLWPVLVLAI 227 LQFWFWFTPIVYV +LPEW L YNPMA ++ +YQ++ Y Q PNW +L PV V++I Sbjct: 181 LQFWFWFTPIVYVSKTLPEWVSGLLAYNPMATIIGSYQNVMLYHQSPNWMALLPVTVVSI 240 Query: 228 IFCAFGMRLFRKHAA 242 I F RLF+KHAA Sbjct: 241 ILFLFAWRLFKKHAA 255>ref|NP_254138.1| (NC_002516) membrane subunit of A-band LPS efflux transporter [Pseudomonas aeruginosa] pir||E82964 membrane subunit of A-band LPS efflux transporter PA5451 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG08836.1|AE004958_6 (AE004958) membrane subunit of A-band LPS efflux transporter [Pseudomonas aeruginosa] Length = 265 Score = 217 bits (552), Expect = 3e-56 Identities = 135/254 (53%), Positives = 182/254 (71%), Gaps = 16/254 (6%) Query: 7 AIYGYRGFIWSSIKRDFQS-YQTSMLGALWLVLQPLAMILVYTLVFSEVMKARMPDNSGP 65 +++GYRGF+ S+KR+FQS Y+ S+ GALW VL PL+MI+VYT++FS+VM+AR+P Sbjct: 8 SLWGYRGFVLGSVKREFQSRYRGSLFGALWTVLNPLSMIVVYTVIFSQVMRARLPGVDDG 67 Query: 66 FAYSIYLCSGVLTWGLFTEILDKSQSVFITNANLIKKLSFPKICLPVIVTASA------- 118 AYS+YLC+G+LTWGLF EI +SQS+FI NANL+KK+SFP+ICLPVIV +A Sbjct: 68 LAYSVYLCAGLLTWGLFAEITSRSQSMFIENANLLKKISFPRICLPVIVLLNAGVNFAII 127 Query: 119 --------VFTGNFPGVLFFSVLPVLALQVLFTVGLGMTLGVMNVFFRDVGQFVGVLLQF 170 +G PG +++P+LA+QVLF GLGM LGV+NVFFRDVGQ G+ LQF Sbjct: 128 LALFLGFLALSGRLPGAALLALVPLLAIQVLFAAGLGMILGVLNVFFRDVGQLFGICLQF 187 Query: 171 WFWFTPIVYVLNSLPEWARTSLMYNPMARVMQAYQSIFAYQQQPNWYSLWPVLVLAIIFC 230 WFW TPIVY + LPE R+ + NPM +M++YQ +F + Q P+W SL P+ +LA++ C Sbjct: 188 WFWLTPIVYPIGILPEGIRSLIELNPMTALMRSYQQLFLHGQWPDWPSLLPITLLALLLC 247 Query: 231 AFGMRLFRKHAAGM 244 A G+RLFR+ M Sbjct: 248 ALGLRLFRQRVGEM 261>gb|AAC16667.1| (U63722) membrane-spanning domain MSD [Pseudomonas aeruginosa] Length = 265 Score = 216 bits (549), Expect = 6e-56 Identities = 135/254 (53%), Positives = 181/254 (71%), Gaps = 16/254 (6%) Query: 7 AIYGYRGFIWSSIKRDFQS-YQTSMLGALWLVLQPLAMILVYTLVFSEVMKARMPDNSGP 65 +++GYRGF S+KR+FQS Y+ S+ GALW VL PL+MI+VYT++FS+VM+AR+P Sbjct: 8 SLWGYRGFALGSVKREFQSRYRGSLFGALWTVLNPLSMIVVYTVIFSQVMRARLPGVDDG 67 Query: 66 FAYSIYLCSGVLTWGLFTEILDKSQSVFITNANLIKKLSFPKICLPVIVTASA------- 118 AYS+YLC+G+LTWGLF EI +SQS+FI NANL+KK+SFP+ICLPVIV +A Sbjct: 68 LAYSVYLCAGLLTWGLFAEITSRSQSMFIENANLLKKISFPRICLPVIVLLNAGVNFAII 127 Query: 119 --------VFTGNFPGVLFFSVLPVLALQVLFTVGLGMTLGVMNVFFRDVGQFVGVLLQF 170 +G PG +++P+LA+QVLF GLGM LGV+NVFFRDVGQ G+ LQF Sbjct: 128 LALFLGFLALSGRLPGAALLALVPLLAIQVLFAAGLGMILGVLNVFFRDVGQLFGICLQF 187 Query: 171 WFWFTPIVYVLNSLPEWARTSLMYNPMARVMQAYQSIFAYQQQPNWYSLWPVLVLAIIFC 230 WFW TPIVY + LPE R+ + NPM +M++YQ +F + Q P+W SL P+ +LA++ C Sbjct: 188 WFWLTPIVYPIGILPEGIRSLIELNPMTALMRSYQQLFLHGQWPDWPSLLPITLLALLLC 247 Query: 231 AFGMRLFRKHAAGM 244 A G+RLFR+ M Sbjct: 248 ALGLRLFRQRVGEM 261>gb|AAK53482.1|AF204145_23 (AF204145) ABC transporter [Xanthomonas campestris pv. campestris] Length = 261 Score = 150 bits (378), Expect = 4e-36 Identities = 94/260 (36%), Positives = 151/260 (57%), Gaps = 22/260 (8%) Query: 4 MLLAIYGYRGFIWSSIKRDFQ-SYQTSMLGALWLVLQPLAMILVYTLVFSEVMKARMPDN 62 M+ +++ +R FI SSI+ D + + S LGALW+++ PL +L++ + SEV+ A++P Sbjct: 1 MIRSVWAFRYFILSSIRNDLRLRFLRSKLGALWMIIHPLMQVLIFATILSEVLAAKLPGV 60 Query: 63 SGPFAYSIYLCSGVLTWGLFTEILDKSQSVFITNANLIKKLSFPKICLPVIVTASAVFTG 122 + FAY++YL +G L W LF E + K S+F+ N NL+KK +FP+ICLP+I V Sbjct: 61 NNEFAYALYLMAGTLCWTLFAECIGKCVSLFVDNGNLMKKQAFPRICLPLI-AGGTVMVN 119 Query: 123 NFPGVLFFSVLPVLAL------------------QVLFTVGLGMTLGVMNVFFRDVGQFV 164 N +LF +++ V A+ + F + +G+ LGV NVF RD+GQ V Sbjct: 120 NL--LLFLAIIIVFAILGHTLGPQAAWLPLLMLLTLAFAMSIGLLLGVFNVFVRDIGQVV 177 Query: 165 GVLLQFWFWFTPIVYVLNSLPEWARTSLMYNPMARVMQAYQSIFAYQQQPNWYSLWPVLV 224 V+LQ FW TPIVY ++ LP + NP+ ++ AYQ + Y + P W L P+++ Sbjct: 178 PVVLQAMFWVTPIVYTIDILPAQTQELFKLNPLFPLVSAYQGVLLYGRSPEWIELVPLML 237 Query: 225 LAIIFCAFGMRLFRKHAAGM 244 ++ C + +FR+ +A M Sbjct: 238 ATLVLCVLSLVVFRRASAEM 257>ref|NP_213745.1| (NC_000918) ABC transporter (ABC-2 subfamily) [Aquifex aeolicus] pir||C70394 ABC transporter (ABC-2 subfamily) - Aquifex aeolicus gb|AAC07147.1| (AE000723) ABC transporter (ABC-2 subfamily) [Aquifex aeolicus] Length = 256 Score = 113 bits (282), Expect = 6e-25 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 16/230 (6%) Query: 26 YQTSMLGALWLVLQPLAMILVYTLVFSEVMKARMPDNSGPFAYSIYLCSGVLTWGLFTEI 85 Y ++LG W L P+ ++L+YTL+FS ++ A++ + +AYSIYL SG+ W F+ Sbjct: 18 YADTVLGIWWAFLWPILLVLIYTLIFSHLIGAKLGHENTVYAYSIYLSSGIFPWFFFSNS 77 Query: 86 LDKSQSVFITNANLIKKLSFPKICLPVIVTAS---------------AVFTGNFPGVLFF 130 L + +F L K+ PV+V S + T F G+ +F Sbjct: 78 LSRITGIFTEKKFLFTKIPIRLEVFPVVVIISELINYLIGISLVTLISFITLGFEGIKYF 137 Query: 131 SVLPV-LALQVLFTVGLGMTLGVMNVFFRDVGQFVGVLLQFWFWFTPIVYVLNSLPEWAR 189 + PV L L ++++ +GM LG +NVFFRD+ + +GV LQ +FWFTPIVY L+ LP + + Sbjct: 138 YLFPVALYLMIVYSFSIGMVLGTLNVFFRDIKEIIGVFLQIFFWFTPIVYTLDILPPFVK 197 Query: 190 TSLMYNPMARVMQAYQSIFAYQQQPNWYSLWPVLVLAIIFCAFGMRLFRK 239 + YNPM V+ + +F + YSL L+ + + F+K Sbjct: 198 KLIYYNPMYPVVSIHHLVFVNYLDLHLYSLLGFLLASPLVFFVSYYFFKK 247Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Jan 15, 2002 6:20 AM Number of letters in database: 267,814,640 Number of sequences in database: 0 Lambda K H 0.331 0.143 0.458 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,606,699 Number of Sequences: 0 Number of extensions: 1306497 Number of successful extensions: 4912 Number of sequences better than 10.0: 115 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 43 Number of HSP's that attempted gapping in prelim test: 4697 Number of HSP's gapped (non-prelim): 118 length of query: 244 length of database: 73,514,059 effective HSP length: 108 effective length of query: 136 effective length of database: 47,477,527 effective search space: 6456943672 effective search space used: 6456943672 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 65 (29.6 bits)