Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1013184638-25241-5445

Query= 3H5_131_132_TBLASTX
         (465 letters)


Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS, or phase 0, 1 or 2 HTGS sequences) 
           1,170,126 sequences; 4,850,248,762 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports




                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

gi|11379536|gb|AE000037.2|AE000037  Mycoplasma pneumonia...    35   0.98   1 
gi|639784|gb|L38997.1|MYCHMWB  Mycoplasman pneumoniae cy...    35   0.98   1 
gi|16876432|gb|AF098273.2|AF098273  Bacillus stearotherm...    32   2.9    2 
gi|14349227|dbj|AP003135.2|  Staphylococcus aureus subsp...    32   4.8    1 
gi|14247399|dbj|AP003363.2|  Staphylococcus aureus subsp...    32   4.8    1 
gi|2313337|gb|AE000544.1|AE000544  Helicobacter pylori 2...    29   9.5    2 

Alignments
>gi|11379536|gb|AE000037.2|AE000037 Mycoplasma pneumoniae M129 section 43 of 63 of the complete genome
          Length = 11341

 Score = 34.5 bits (69), Expect = 0.98
 Identities = 13/41 (31%), Positives = 23/41 (55%)
 Frame = +2 / +3

                                                     
Query: 8    LR*KCEISNVFNNHANFVVTFESRRKHAKRNQNAPKECDAP 130
            +R K E++   +   +F +   +  KHAK+ +  PK C+AP
Sbjct: 2595 MRIKVEVNTACSGFHSFTLLMANNTKHAKKEKLKPKLCNAP 2717



>gi|639784|gb|L38997.1|MYCHMWB Mycoplasman pneumoniae cytadherence-accessory protein HMW1 (hmw1)
            gene, complete cds; cytadherence-accessory protein HMW3
            (hmw3) gene, complete cds; ribosomal protein S4 (RPS4)
            gene, complete cds; multiple ORFS, complete cds's
          Length = 10477

 Score = 34.5 bits (69), Expect = 0.98
 Identities = 13/41 (31%), Positives = 23/41 (55%)
 Frame = +2 / -1

                                                     
Query: 8    LR*KCEISNVFNNHANFVVTFESRRKHAKRNQNAPKECDAP 130
            +R K E++   +   +F +   +  KHAK+ +  PK C+AP
Sbjct: 3013 MRIKVEVNTACSGFHSFTLLMANNTKHAKKEKLKPKLCNAP 2891



>gi|16876432|gb|AF098273.2|AF098273 Bacillus stearothermophilus beta-xylosidase (xynB2) gene, partial
            cds; intra-cellular xylanase (xynA2) gene, complete cds;
            glucuronic acid catabolism operon, complete sequence;
            extra-cellular xylanase (xynA) gene, complete cds; and
            unknown genes
          Length = 23464

 Score = 31.8 bits (63), Expect(2) = 2.9
 Identities = 9/17 (52%), Positives = 15/17 (87%)
 Frame = +1 / +2

                             
Query: 79   QKARKTKPKCTKRVRCT 129
            Q+++K+KP+C+ R RCT
Sbjct: 3524 QRSKKSKPRCSPRARCT 3574




 Score = 24.4 bits (47), Expect(2) = 2.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3 / +2

                             
Query: 135  GYKLCDKIFLYSIGYML 185
            G++LCD  ++  IGY L
Sbjct: 6785 GFQLCDSCWIV*IGYQL 6835



>gi|14349227|dbj|AP003135.2| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome,
             section 7/10
          Length = 291150

 Score = 32.2 bits (64), Expect = 4.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3 / +2

                                        
Query: 400   VSSFIFLEL*LEPCPSRPIYSLGCDFI 320
             V+ FI+  L + PCP R IY +  D++
Sbjct: 27326 VAGFIYCRLGISPCPERIIYEIVIDYL 27406



>gi|14247399|dbj|AP003363.2| Staphylococcus aureus subsp. aureus Mu50 genomic DNA, complete sequence,
              section 6/9
          Length = 342600

 Score = 32.2 bits (64), Expect = 4.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3 / +2

                                         
Query: 400    VSSFIFLEL*LEPCPSRPIYSLGCDFI 320
              V+ FI+  L + PCP R IY +  D++
Sbjct: 170387 VAGFIYCRLGISPCPERIIYEIVIDYL 170467



>gi|2313337|gb|AE000544.1|AE000544 Helicobacter pylori 26695 section 22 of 134 of the complete genome
          Length = 11908

 Score = 29.0 bits (57), Expect(2) = 9.5
 Identities = 12/32 (37%), Positives = 16/32 (49%)
 Frame = -3 / -3

                                            
Query: 151  SHNL*PKWCIALFWCILVSFCVLSARFKSNDK 56
            S  L*P  C  LFWC L   C + +    ++K
Sbjct: 7676 SLRL*PLACCFLFWCSLAKGCAMLSTLTCSNK 7581




 Score = 24.4 bits (47), Expect(2) = 9.5
 Identities = 8/18 (44%), Positives = 11/18 (60%)
 Frame = -3 / -3

                              
Query: 352  RPIYSLGCDFIFWYFMSP 299
            RP++ L C +IFW    P
Sbjct: 7799 RPVFLL*CLWIFWVLACP 7746




  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
  or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Feb 7, 2002 11:33 PM
  Number of letters in database: 555,281,466
  Number of sequences in database:  0
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 314,679,267
Number of Sequences: 0
Number of extensions: 3772018
Number of successful extensions: 242342
Number of sequences better than 10.0: 6
length of database: 121,197,164
effective HSP length: 50
effective length of database: 115,015,814
effective search space used: 11961644656
frameshift window, decay const: 50,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)