BLASTX 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
RID: 1030627299-026244-28588
Query= 8G1_131_132BLASTX
(1002 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
1,039,285 sequences; 328,747,273 total letters
If you have any problems or questions with the results of this search
please refer to the BLAST FAQs
Taxonomy reports
Score E
Sequences producing significant alignments: (bits) Value
gi|21243530|ref|NP_643112.1| (NC_003919) two-component syst... 80 8e-15
gi|17548535|ref|NP_521875.1| (NC_003296) PROBABLE TWO COMPO... 71 6e-12
gi|21243531|ref|NP_643113.1| (NC_003919) two-component syst... 47 5e-07
gi|22298873|ref|NP_682120.1| (NC_004113) two-component resp... 50 2e-05
gi|17231804|ref|NP_488352.1| (NC_003272) two-component syst... 49 2e-05
gi|15605840|ref|NP_213217.1| (NC_000918) transcriptional re... 49 2e-05
gi|16332107|ref|NP_442835.1| (NC_000911) OmpR subfamily [Sy... 49 3e-05
gi|21241099|ref|NP_640681.1| (NC_003919) two-component syst... 48 4e-05
gi|17549382|ref|NP_522722.1| (NC_003296) PROBABLE TWO-COMPO... 48 6e-05
gi|21224667|ref|NP_630446.1| (NC_003888) putative two-compo... 47 1e-04
gi|15640738|ref|NP_230368.1| (NC_002505) DNA-binding respon... 47 1e-04
gi|3282774|gb|AAC25063.1| (AF043352) response regulator hom... 45 3e-04
gi|15839182|ref|NP_299870.1| (NC_002488) two-component syst... 45 4e-04
gi|21465542|pdb|1GXP|A Chain A, Phob Effector Domain In Com... 45 4e-04
gi|8569282|pdb|1QQI|A Chain A, Solution Structure Of The Dn... 45 4e-04
gi|16332195|ref|NP_442923.1| (NC_000911) OmpR subfamily [Sy... 45 4e-04
gi|1172481|sp|P45605|PHOB_KLEPN Phosphate regulon transcrip... 45 4e-04
gi|1172482|sp|P45606|PHOB_SHIDY Phosphate regulon transcrip... 45 4e-04
gi|15800125|ref|NP_286137.1| (NC_002655) positive response ... 45 4e-04
gi|16759374|ref|NP_454991.1| (NC_003198) phosphate regulon ... 45 4e-04
gi|15602297|ref|NP_245369.1| (NC_002663) PhoB [Pasteurella ... 45 4e-04
gi|15805769|ref|NP_294466.1| (NC_001263) response regulator... 45 5e-04
gi|22124885|ref|NP_668308.1| (NC_004088) positive response ... 44 6e-04
gi|16118480|gb|AAL14442.1|AF370885_4 (AF370885) AdeR respon... 44 6e-04
gi|16123366|ref|NP_406679.1| (NC_003143) phosphate regulon ... 44 6e-04
gi|15601853|ref|NP_233484.1| (NC_002506) DNA-binding respon... 44 8e-04
gi|16125434|ref|NP_419998.1| (NC_002696) DNA-binding respon... 44 0.001
gi|19553859|ref|NP_601861.1| (NC_003450) COG0745:Response r... 44 0.001
gi|13474480|ref|NP_106048.1| (NC_002678) two-component resp... 43 0.001
gi|1903396|gb|AAC45062.1| (U67069) response regulator prote... 43 0.001
gi|16119348|ref|NP_396054.1| (NC_003064) AGR_pAT_177p [Agro... 43 0.001
gi|21241807|ref|NP_641389.1| (NC_003919) two-component syst... 43 0.001
gi|21230432|ref|NP_636349.1| (NC_003902) two-component syst... 43 0.001
gi|17938707|ref|NP_535495.1| (NC_003306) two component resp... 43 0.001
gi|20808829|ref|NP_624000.1| (NC_003869) Response regulator... 43 0.002
gi|16080525|ref|NP_391352.1| (NC_000964) similar to two-com... 42 0.002
gi|16331000|ref|NP_441728.1| (NC_000911) OmpR subfamily [Sy... 42 0.002
gi|1172483|sp|P45607|PHOB_SHIFL Phosphate regulon transcrip... 42 0.002
gi|18311314|ref|NP_563248.1| (NC_003366) two-component resp... 42 0.003
gi|7339508|emb|CAB82844.1| (AJ277080) putative response reg... 42 0.003
gi|3237372|gb|AAC38775.1| (AF041833) response regulator hom... 42 0.003
gi|4104608|gb|AAD10267.1| (AF036968) putative response regu... 42 0.003
gi|15807647|ref|NP_295328.1| (NC_001263) response regulator... 42 0.003
gi|4103328|gb|AAD01739.1| (AF022772) response regulator [Pe... 42 0.003
gi|15608043|ref|NP_215418.1| (NC_000962) hypothetical prote... 42 0.004
gi|16124086|ref|NP_407399.1| (NC_003143) putative response ... 42 0.004
gi|15900299|ref|NP_344903.1| (NC_003028) DNA-binding respon... 42 0.004
gi|15902380|ref|NP_357930.1| (NC_003098) Response regulator... 42 0.004
gi|18309624|ref|NP_561558.1| (NC_003366) two-component resp... 42 0.004
gi|13474926|ref|NP_106496.1| (NC_002678) phosphate regulato... 41 0.005
Alignments
>gi|21243530|ref|NP_643112.1| (NC_003919) two-component system regulatory protein [Xanthomonas
axonopodis pv. citri str. 306]
gi|21109094|gb|AAM37648.1| (AE011921) two-component system regulatory protein [Xanthomonas
axonopodis pv. citri str. 306]
Length = 229
Score = 80.5 bits (197), Expect = 8e-15
Identities = 37/67 (55%), Positives = 50/67 (74%)
Frame = +1
Query: 91 TGFSILSTLMKASTRPLSRQLLLEKCLPESDALERVVDTHVYNLRRKLEAAGVDNVIFNV 270
T F++L+ L+K + +R LL+ CLP+SDALERVVD+H++NLRRKLE G+ V+ V
Sbjct: 162 TEFNLLALLLKTPFKAFTRSELLDACLPDSDALERVVDSHIHNLRRKLEVHGITGVLVTV 221
Query: 271 RGVGYRF 291
R VGYRF
Sbjct: 222 RAVGYRF 228
>gi|17548535|ref|NP_521875.1| (NC_003296) PROBABLE TWO COMPONENT RESPONSE REGULATOR TRANSCRIPTION
REGULATOR PROTEIN [Ralstonia solanacearum]
gi|17430783|emb|CAD17465.1| (AL646078) PROBABLE TWO COMPONENT RESPONSE REGULATOR TRANSCRIPTION
REGULATOR PROTEIN [Ralstonia solanacearum]
Length = 256
Score = 70.9 bits (172), Expect = 6e-12
Identities = 36/71 (50%), Positives = 45/71 (62%)
Frame = +1
Query: 88 ITGFSILSTLMKASTRPLSRQLLLEKCLPESDALERVVDTHVYNLRRKLEAAGVDNVIFN 267
+T F +L+ L +A R SR LL CLPE D LER VD+H+ LR+KLE GV+ +
Sbjct: 185 LTEFKLLAQLARAPKRVFSRAELLAACLPEGDTLERTVDSHISKLRKKLEDLGVNGMPVG 244
Query: 268 VRGVGYRFCKL 300
VRGVGYR L
Sbjct: 245 VRGVGYRLWSL 255
>gi|21243531|ref|NP_643113.1| (NC_003919) two-component system sensor protein [Xanthomonas
axonopodis pv. citri str. 306]
gi|21109095|gb|AAM37649.1| (AE011921) two-component system sensor protein [Xanthomonas
axonopodis pv. citri str. 306]
Length = 397
Score = 47.0 bits (110), Expect(2) = 5e-07
Identities = 39/142 (27%), Positives = 57/142 (39%), Gaps = 7/142 (4%)
Frame = +2
Query: 449 LRKILVLXXTPA*XR*EXGXX-RQ*RRSQG-----CDTYWGXDYSTPSXXXXNWGWXXXX 610
LR L+L PA R E Q R +Q Y+ + P +W W
Sbjct: 45 LRYSLILSNVPAEPRAEISQLIEQPRANQARLWELFQRYYDIENFLPGLANPDW-WMLGA 103
Query: 611 XXXXXXXXXXMCVRIA-RPLTAQFRNLTDVAETVAQGNFKQQAELVQACPDXXIRFSTXX 787
C +A RPL+ QF + A V+ G+F +A++V+ PD +
Sbjct: 104 MMTISVPVILFCGLLASRPLSRQFSQVAFAAHRVSDGDFGARAQVVRGAPDELTALADDF 163
Query: 788 NEMVNKLAXYEREIKASHVAXA 853
N M +L YERE++ S A
Sbjct: 164 NTMSGRLQQYERELRDSSAMLA 185
Score = 36.6 bits (83), Expect = 0.13
Identities = 15/46 (32%), Positives = 25/46 (53%)
Frame = +3
Query: 306 RKNKSLLFWVSVRIVIVAIVTLFTIILAMWGIFAAQYFYVIHEMPA 443
R L +WV +R+ +A+VT+ I MW F +Y ++ +PA
Sbjct: 11 RNQAPLWWWVGLRMSALAVVTMMVIAFGMWCYFNLRYSLILSNVPA 56
Score = 27.3 bits (59), Expect(2) = 5e-07
Identities = 11/17 (64%), Positives = 13/17 (75%)
Frame = +1
Query: 847 VGHELRPPLTGAMGRLQ 897
+ HELR PL AMGR+Q
Sbjct: 184 LAHELRTPLNAAMGRVQ 200
>gi|22298873|ref|NP_682120.1| (NC_004113) two-component response regulator [Thermosynechococcus
elongatus BP-1]
gi|22295054|dbj|BAC08882.1| (AP005373) two-component response regulator [Thermosynechococcus
elongatus BP-1]
Length = 248
Score = 49.7 bits (117), Expect = 2e-05
Identities = 29/65 (44%), Positives = 38/65 (57%), Gaps = 1/65 (1%)
Frame = +1
Query: 97 FSILSTLMKASTRPLSRQLLLEKCLPESDALERVVDTHVYNLRRKLEA-AGVDNVIFNVR 273
FS+L L + PLSRQ LL + PE+ R VDTH+ +LR+K+E +I VR
Sbjct: 156 FSLLYVLTQMGGTPLSRQELLRRAWPENIDNPRTVDTHILSLRKKIEVDPQQPRLIQTVR 215
Query: 274 GVGYR 288
VGYR
Sbjct: 216 NVGYR 220
>gi|17231804|ref|NP_488352.1| (NC_003272) two-component system response regulator [Nostoc sp. PCC
7120]
gi|17133448|dbj|BAB76011.1| (AP003596) two-component system response regulator [Nostoc sp. PCC
7120]
Length = 256
Score = 49.3 bits (116), Expect = 2e-05
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +1
Query: 97 FSILSTLMKASTRPLSRQLLLEKCLPESDALERVVDTHVYNLRRKLEA-AGVDNVIFNVR 273
FS+L L +A PLSR LL + P++ R +DTHV +LR+K+E ++I +R
Sbjct: 158 FSLLYVLAQAGGVPLSRSELLRRAWPDAIDNPRTIDTHVLSLRKKVELDPRQPSLIQTIR 217
Query: 274 GVGYRF 291
VGYRF
Sbjct: 218 NVGYRF 223
>gi|15605840|ref|NP_213217.1| (NC_000918) transcriptional regulator (PhoB-like) [Aquifex
aeolicus]
gi|7444046|pir||E70328 transcription regulator PhoB-like - Aquifex aeolicus
gi|2982999|gb|AAC06611.1| (AE000683) transcriptional regulator (PhoB-like) [Aquifex aeolicus]
Length = 228
Score = 49.3 bits (116), Expect = 2e-05
Identities = 30/66 (45%), Positives = 39/66 (58%), Gaps = 1/66 (1%)
Frame = +1
Query: 97 FSILSTLMKASTRPLSRQLLLEKCLP-ESDALERVVDTHVYNLRRKLEAAGVDNVIFNVR 273
F IL TLM+ RP+SR L+EK E + ER +D HV ++R KL +I VR
Sbjct: 163 FKILKTLMENFGRPVSRSSLVEKLWDYERETTERAIDVHVKHIRDKL--GKYKGLIKTVR 220
Query: 274 GVGYRF 291
GVGY+F
Sbjct: 221 GVGYKF 226
>gi|16332107|ref|NP_442835.1| (NC_000911) OmpR subfamily [Synechocystis sp. PCC 6803]
gi|7444058|pir||S76735 hypothetical protein - Synechocystis sp. (strain PCC 6803)
gi|1653736|dbj|BAA18647.1| (D90916) OmpR subfamily [Synechocystis sp. PCC 6803]
Length = 250
Score = 48.9 bits (115), Expect = 3e-05
Identities = 29/66 (43%), Positives = 39/66 (58%), Gaps = 1/66 (1%)
Frame = +1
Query: 97 FSILSTLMKASTRPLSRQLLLEKCLPESDALERVVDTHVYNLRRKLEA-AGVDNVIFNVR 273
FS+L L +A LSR LL + PE+ R +DTHV +LR+K+E ++I VR
Sbjct: 158 FSLLYVLTQAEGSALSRTELLRRAWPEAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVR 217
Query: 274 GVGYRF 291
VGYRF
Sbjct: 218 NVGYRF 223
>gi|21241099|ref|NP_640681.1| (NC_003919) two-component system regulatory protein [Xanthomonas
axonopodis pv. citri str. 306]
gi|21106398|gb|AAM35217.1| (AE011658) two-component system regulatory protein [Xanthomonas
axonopodis pv. citri str. 306]
Length = 227
Score = 48.1 bits (113), Expect = 4e-05
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +1
Query: 97 FSILSTLMKASTRPLSRQLLLEKCLPESDAL-ERVVDTHVYNLRRKLEAAGVDNVIFNVR 273
F +L TL A R SR+ L+ + + + +R VD+HV NLRRKL AG ++ + +V
Sbjct: 160 FRLLRTLAAAPGRVYSREQLMGRLYADHRIVTDRTVDSHVKNLRRKLADAGGEDWVRSVY 219
Query: 274 GVGYRF 291
G GYRF
Sbjct: 220 GAGYRF 225
>gi|17549382|ref|NP_522722.1| (NC_003296) PROBABLE TWO-COMPONENT RESPONSE REGULATOR TRANSCRIPTION
REGULATOR PROTEIN [Ralstonia solanacearum]
gi|17431635|emb|CAD18312.1| (AL646083) PROBABLE TWO-COMPONENT RESPONSE REGULATOR TRANSCRIPTION
REGULATOR PROTEIN [Ralstonia solanacearum]
Length = 219
Score = 47.8 bits (112), Expect = 6e-05
Identities = 31/66 (46%), Positives = 39/66 (58%), Gaps = 2/66 (3%)
Frame = +1
Query: 97 FSILSTLMKASTRPLSRQLLLEKCLPESDAL-ERVVDTHVYNLRRKLEAAGV-DNVIFNV 270
F +LS L A R LSR LLE+ + + +R VDTHV NLRRK+E +I +V
Sbjct: 151 FRLLSALANAPGRILSRANLLEQIYDDHRVVTDRTVDTHVKNLRRKMELVSPGTELIHSV 210
Query: 271 RGVGYR 288
GVGYR
Sbjct: 211 YGVGYR 216
>gi|21224667|ref|NP_630446.1| (NC_003888) putative two-component regulator [Streptomyces
coelicolor A3(2)]
gi|7481658|pir||T29444 probable two-component regulator - Streptomyces coelicolor
gi|3367760|emb|CAA20085.1| (AL031155) putative two-component regulator [Streptomyces
coelicolor A3(2)]
Length = 204
Score = 47.0 bits (110), Expect = 1e-04
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +1
Query: 91 TGFSILSTLMKASTRPLSRQLLLEKCLPESDAL-ERVVDTHVYNLRRKLEAAGVDNVIFN 267
T F +L+ LM AS + R+ L+ PE + E +D ++ LRRKL AAG D I
Sbjct: 136 TEFRLLAALMAASGNIVRRRELVRAAWPEGAQVHENTLDQYLTRLRRKLRAAGSDRTIGT 195
Query: 268 VRGVGYR 288
RG+G+R
Sbjct: 196 ARGIGHR 202
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: Aug 28, 2002 2:02 AM
Number of letters in database: 328,747,273
Number of sequences in database: 1,039,285
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,183,104
Number of Sequences: 1039285
Number of extensions: 2423689
Number of successful extensions: 5760
Number of sequences better than 10.0: 459
Number of HSP's better than 10.0 without gapping: 5596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5737
length of database: 88,091,237
effective HSP length: 113
effective length of database: 55,418,417
effective search space used: 12192051740
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)