BLASTX 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
RID: 1030626143-016128-19455
Query= 7E7_131_132_BLASTX
(524 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
1,039,285 sequences; 328,747,273 total letters
If you have any problems or questions with the results of this search
please refer to the BLAST FAQs
Taxonomy reports
Score E
Sequences producing significant alignments: (bits) Value
gi|22127059|ref|NP_670482.1| (NC_004088) repressor of galET... 218 1e-56
gi|16121107|ref|NP_404420.1| (NC_003143) galactose operon r... 218 1e-56
gi|16130741|ref|NP_417314.1| (NC_000913) repressor of galET... 201 1e-51
gi|15803357|ref|NP_289390.1| (NC_002655) repressor of galET... 199 3e-51
gi|16761789|ref|NP_457406.1| (NC_003198) galactose operon r... 199 5e-51
gi|16766313|ref|NP_461928.1| (NC_003197) transcriptional re... 199 5e-51
gi|16761133|ref|NP_456750.1| (NC_003198) mgl repressor and ... 147 2e-35
gi|16765521|ref|NP_461136.1| (NC_003197) transcriptional re... 147 2e-35
gi|16130089|ref|NP_416656.1| (NC_000913) mgl repressor, gal... 147 2e-35
gi|15802707|ref|NP_288734.1| (NC_002655) mgl repressor, gal... 147 2e-35
gi|321837|pir||S28962 isorepressor galS - Escherichia coli ... 143 3e-34
gi|15602902|ref|NP_245974.1| (NC_002663) GalR [Pasteurella ... 138 8e-33
gi|282093|pir||S27986 gal repressor - Haemophilus influenza... 137 2e-32
gi|16272762|ref|NP_438981.1| (NC_000907) galactose operon r... 137 2e-32
gi|15642335|ref|NP_231968.1| (NC_002505) transcriptional re... 137 2e-32
gi|16764899|ref|NP_460514.1| (NC_003197) putative transcrip... 93 4e-19
gi|16152088|gb|AAL14964.1|AF418982_1 (AF418982) putative tr... 91 3e-18
gi|13507274|gb|AAK28539.1| (AF335466) putative transcriptio... 89 6e-18
gi|16122507|ref|NP_405820.1| (NC_003143) putative LacI-fami... 89 6e-18
gi|15641299|ref|NP_230931.1| (NC_002505) transcriptional re... 83 4e-16
gi|16120508|ref|NP_403821.1| (NC_003143) LacI-family transc... 79 8e-15
gi|8572242|gb|AAF77060.1|AF266466_2 (AF266466) putative DNA... 66 7e-11
gi|12831459|gb|AAK08614.1| (AF065242) ChcR' [Agrobacterium ... 65 9e-11
gi|1173387|sp|P43472|SCRR_PEDPE SUCROSE OPERON REPRESSOR (S... 62 7e-10
gi|15641565|ref|NP_231197.1| (NC_002505) transcriptional re... 62 1e-09
gi|21218637|ref|NP_624416.1| (NC_003888) putative LacI fami... 60 3e-09
gi|20807244|ref|NP_622415.1| (NC_003869) Transcriptional re... 59 1e-08
gi|21222556|ref|NP_628335.1| (NC_003888) putative LacI-fami... 57 3e-08
gi|17547579|ref|NP_520981.1| (NC_003295) PUTATIVE TRANSCRIP... 57 3e-08
gi|17545733|ref|NP_519135.1| (NC_003295) PROBABLE TRANSCRIP... 55 3e-08
gi|16804033|ref|NP_465518.1| (NC_003210) similar to transcr... 57 4e-08
gi|16801168|ref|NP_471436.1| (NC_003212) similar to transcr... 57 4e-08
gi|21243233|ref|NP_642815.1| (NC_003919) transcriptional re... 56 5e-08
gi|21221197|ref|NP_626976.1| (NC_003888) probable LacI-fami... 56 7e-08
gi|21231806|ref|NP_637723.1| (NC_003902) transcriptional re... 55 9e-08
gi|16766314|ref|NP_461929.1| (NC_003197) putative transcrip... 55 9e-08
gi|16761790|ref|NP_457407.1| (NC_003198) possible regulator... 55 1e-07
gi|16079270|ref|NP_390094.1| (NC_000964) transcriptional re... 55 1e-07
gi|16119240|ref|NP_395946.1| (NC_003064) AGR_pAT_13p [Agrob... 55 2e-07
gi|17936773|ref|NP_533562.1| (NC_003305) transcriptional re... 55 2e-07
gi|15804525|ref|NP_290565.1| (NC_002655) regulator for deo ... 55 2e-07
gi|5257495|gb|AAD41364.1|AF151698_1 (AF151698) transcriptio... 55 2e-07
gi|17938596|ref|NP_535384.1| (NC_003306) transcriptional re... 55 2e-07
gi|21231648|ref|NP_637565.1| (NC_003902) transcriptional re... 55 2e-07
gi|15891864|ref|NP_357536.1| (NC_003063) AGR_L_3490p [Agrob... 55 2e-07
gi|16130621|ref|NP_417194.1| (NC_000913) ascBF operon repre... 54 2e-07
gi|15803231|ref|NP_289263.1| (NC_002655) ascBF operon repre... 54 2e-07
gi|20807285|ref|NP_622456.1| (NC_003869) Transcriptional re... 54 2e-07
gi|21219593|ref|NP_625372.1| (NC_003888) putative lacI-fami... 54 2e-07
gi|15614782|ref|NP_243085.1| (NC_002570) transcriptional re... 54 2e-07
Alignments
>gi|22127059|ref|NP_670482.1| (NC_004088) repressor of galETK operon [Yersinia pestis KIM]
gi|21960111|gb|AAM86733.1|AE013919_6 (AE013919) repressor of galETK operon [Yersinia pestis KIM]
Length = 363
Score = 218 bits (554), Expect = 1e-56
Identities = 116/162 (71%), Positives = 126/162 (77%), Gaps = 1/162 (0%)
Frame = -3
Query: 522 QYHPNAFSXXXXXPHARAMAXQSTETLGLIVSDVSDPFFGAMVKAVEQVAYATHNFLLIG 343
QYHPNA +ARA+A QSTET+G+IVSDVSDPFFGAMVKAVEQVAYAT NFLLIG
Sbjct: 67 QYHPNA--------NARALAQQSTETVGMIVSDVSDPFFGAMVKAVEQVAYATGNFLLIG 118
Query: 342 NGYHDAEKERQAIEQLVRHRCEALVVHAKRLSDQELCGWMQQIPGMVLINRTLPGFETRC 163
NGYHDAEKERQAIEQL+RHRC ALVVHAK+L D EL M+QIPGMVLINRTLPGFE RC
Sbjct: 119 NGYHDAEKERQAIEQLIRHRCAALVVHAKKLPDDELTSLMEQIPGMVLINRTLPGFEPRC 178
Query: 162 VALDDRYGAWLATVI*SSKGIXXXXXX-XXXXXSDAXDRLQG 40
+ALDDRYGAWLAT +G SDA DR+QG
Sbjct: 179 IALDDRYGAWLATRHLIQQGHKRVAFICSNHQISDALDRMQG 220
>gi|16121107|ref|NP_404420.1| (NC_003143) galactose operon repressor [Yersinia pestis]
gi|15978872|emb|CAC89644.1| (AJ414144) galactose operon repressor [Yersinia pestis]
Length = 340
Score = 218 bits (554), Expect = 1e-56
Identities = 116/162 (71%), Positives = 126/162 (77%), Gaps = 1/162 (0%)
Frame = -3
Query: 522 QYHPNAFSXXXXXPHARAMAXQSTETLGLIVSDVSDPFFGAMVKAVEQVAYATHNFLLIG 343
QYHPNA +ARA+A QSTET+G+IVSDVSDPFFGAMVKAVEQVAYAT NFLLIG
Sbjct: 44 QYHPNA--------NARALAQQSTETVGMIVSDVSDPFFGAMVKAVEQVAYATGNFLLIG 95
Query: 342 NGYHDAEKERQAIEQLVRHRCEALVVHAKRLSDQELCGWMQQIPGMVLINRTLPGFETRC 163
NGYHDAEKERQAIEQL+RHRC ALVVHAK+L D EL M+QIPGMVLINRTLPGFE RC
Sbjct: 96 NGYHDAEKERQAIEQLIRHRCAALVVHAKKLPDDELTSLMEQIPGMVLINRTLPGFEPRC 155
Query: 162 VALDDRYGAWLATVI*SSKGIXXXXXX-XXXXXSDAXDRLQG 40
+ALDDRYGAWLAT +G SDA DR+QG
Sbjct: 156 IALDDRYGAWLATRHLIQQGHKRVAFICSNHQISDALDRMQG 197
>gi|16130741|ref|NP_417314.1| (NC_000913) repressor of galETK operon [Escherichia coli K12]
gi|120927|sp|P03024|GALR_ECOLI Galactose operon repressor
gi|72536|pir||RPECG gal operon repressor - Escherichia coli
gi|41534|emb|CAA23543.1| (V00280) repressor [Escherichia coli]
gi|146068|gb|AAA83860.1| (J01614) operon repressor [Escherichia coli]
gi|882730|gb|AAB40484.1| (U29581) CG Site No. 721; alternate gene name Rgal [Escherichia
coli]
gi|1789202|gb|AAC75876.1| (AE000367) repressor of galETK operon [Escherichia coli K12]
Length = 343
Score = 201 bits (510), Expect = 1e-51
Identities = 106/161 (65%), Positives = 120/161 (73%), Gaps = 1/161 (0%)
Frame = -3
Query: 519 YHPNAFSXXXXXPHARAMAXQSTETLGLIVSDVSDPFFGAMVKAVEQVAYATHNFLLIGN 340
YHPNA +ARA+A Q+TET+GL+V DVSDPFFGAMVKAVEQVAY T NFLLIGN
Sbjct: 45 YHPNA--------NARALAQQTTETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGN 96
Query: 339 GYHDAEKERQAIEQLVRHRCEALVVHAKRLSDQELCGWMQQIPGMVLINRTLPGFETRCV 160
GYH+ +KERQAIEQL+RHRC ALVVHAK + D +L M+Q+PGMVLINR LPGFE RC+
Sbjct: 97 GYHNEQKERQAIEQLIRHRCAALVVHAKMIPDADLASLMKQMPGMVLINRILPGFENRCI 156
Query: 159 ALDDRYGAWLATVI*SSKG-IXXXXXXXXXXXSDAXDRLQG 40
ALDDRYGAWLAT +G SDA DRLQG
Sbjct: 157 ALDDRYGAWLATRHLIQQGHTRIGYLCSNHSISDAEDRLQG 197
>gi|15803357|ref|NP_289390.1| (NC_002655) repressor of galETK operon [Escherichia coli O157:H7
EDL933]
gi|15832948|ref|NP_311721.1| (NC_002695) repressor of galETK operon [Escherichia coli O157:H7]
gi|12517326|gb|AAG57949.1|AE005512_8 (AE005512) repressor of galETK operon [Escherichia coli O157:H7
EDL933]
gi|13363166|dbj|BAB37117.1| (AP002563) repressor of galETK operon [Escherichia coli O157:H7]
Length = 343
Score = 199 bits (507), Expect = 3e-51
Identities = 105/161 (65%), Positives = 120/161 (74%), Gaps = 1/161 (0%)
Frame = -3
Query: 519 YHPNAFSXXXXXPHARAMAXQSTETLGLIVSDVSDPFFGAMVKAVEQVAYATHNFLLIGN 340
YHPNA +ARA+A Q+TET+GL+V DVSDPFFGAMVKAVEQVAY T NFLLIGN
Sbjct: 45 YHPNA--------NARALAQQTTETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGN 96
Query: 339 GYHDAEKERQAIEQLVRHRCEALVVHAKRLSDQELCGWMQQIPGMVLINRTLPGFETRCV 160
GYH+ +KERQAIEQL+RHRC ALVVHAK + D +L ++Q+PGMVLINR LPGFE RC+
Sbjct: 97 GYHNEQKERQAIEQLIRHRCAALVVHAKMIPDADLASLLKQMPGMVLINRILPGFENRCI 156
Query: 159 ALDDRYGAWLATVI*SSKG-IXXXXXXXXXXXSDAXDRLQG 40
ALDDRYGAWLAT +G SDA DRLQG
Sbjct: 157 ALDDRYGAWLATRHLIQQGHTRIGYLCSNHSISDAEDRLQG 197
>gi|16761789|ref|NP_457406.1| (NC_003198) galactose operon repressor [Salmonella enterica subsp.
enterica serovar Typhi]
gi|16504091|emb|CAD02837.1| (AL627277) galactose operon repressor [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 342
Score = 199 bits (505), Expect = 5e-51
Identities = 107/161 (66%), Positives = 119/161 (73%), Gaps = 1/161 (0%)
Frame = -3
Query: 519 YHPNAFSXXXXXPHARAMAXQSTETLGLIVSDVSDPFFGAMVKAVEQVAYATHNFLLIGN 340
YHPNA +ARA+A Q+TETLGL+V DVSDPFFGAMVKAVEQVAY T NFLLIGN
Sbjct: 45 YHPNA--------NARALAQQATETLGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGN 96
Query: 339 GYHDAEKERQAIEQLVRHRCEALVVHAKRLSDQELCGWMQQIPGMVLINRTLPGFETRCV 160
GYH+ +KERQAIEQL+RHRC ALVVHAK + D +L M+QIPGMVLINR LPG E RCV
Sbjct: 97 GYHNEQKERQAIEQLIRHRCAALVVHAKMIPDADLASLMKQIPGMVLINRILPGLEHRCV 156
Query: 159 ALDDRYGAWLATVI*SSKG-IXXXXXXXXXXXSDAXDRLQG 40
ALDDRYGAWLAT +G SDA DRL+G
Sbjct: 157 ALDDRYGAWLATRHLIQQGHTRIGYICSNHTISDAEDRLRG 197
>gi|16766313|ref|NP_461928.1| (NC_003197) transcriptional repressor of galETK operon (GalR/LacI
family) [Salmonella typhimurium LT2]
gi|17865763|sp|P74866|GALR_SALTY Galactose operon repressor
gi|16421561|gb|AAL21887.1| (AE008838) transcriptional repressor of galETK operon [Salmonella
typhimurium LT2]
Length = 342
Score = 199 bits (505), Expect = 5e-51
Identities = 107/161 (66%), Positives = 119/161 (73%), Gaps = 1/161 (0%)
Frame = -3
Query: 519 YHPNAFSXXXXXPHARAMAXQSTETLGLIVSDVSDPFFGAMVKAVEQVAYATHNFLLIGN 340
YHPNA +ARA+A Q+TETLGL+V DVSDPFFGAMVKAVEQVAY T NFLLIGN
Sbjct: 45 YHPNA--------NARALAQQATETLGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGN 96
Query: 339 GYHDAEKERQAIEQLVRHRCEALVVHAKRLSDQELCGWMQQIPGMVLINRTLPGFETRCV 160
GYH+ +KERQAIEQL+RHRC ALVVHAK + D +L M+QIPGMVLINR LPG E RCV
Sbjct: 97 GYHNEQKERQAIEQLIRHRCAALVVHAKMIPDADLASLMKQIPGMVLINRILPGLEHRCV 156
Query: 159 ALDDRYGAWLATVI*SSKG-IXXXXXXXXXXXSDAXDRLQG 40
ALDDRYGAWLAT +G SDA DRL+G
Sbjct: 157 ALDDRYGAWLATRHLIQQGHTRIGYICSNHTISDAEDRLRG 197
>gi|16761133|ref|NP_456750.1| (NC_003198) mgl repressor and galactose ultrainduction factor
[Salmonella enterica subsp. enterica serovar Typhi]
gi|16503431|emb|CAD02573.1| (AL627273) mgl repressor and galactose ultrainduction factor
[Salmonella enterica subsp. enterica serovar Typhi]
Length = 340
Score = 147 bits (371), Expect = 2e-35
Identities = 74/132 (56%), Positives = 97/132 (73%)
Frame = -3
Query: 519 YHPNAFSXXXXXPHARAMAXQSTETLGLIVSDVSDPFFGAMVKAVEQVAYATHNFLLIGN 340
Y PNA +A+A+A Q ++T+G++V DVSD FFGA+VKAV+ VA ++LIGN
Sbjct: 45 YRPNA--------NAQALATQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGN 96
Query: 339 GYHDAEKERQAIEQLVRHRCEALVVHAKRLSDQELCGWMQQIPGMVLINRTLPGFETRCV 160
YH+AEKER AIE L+R RC AL+VH+K L+D+EL +M QIPGMVLINR +PG+ RCV
Sbjct: 97 SYHEAEKERHAIEVLIRQRCNALIVHSKALTDRELSDFMDQIPGMVLINRIVPGYAHRCV 156
Query: 159 ALDDRYGAWLAT 124
LD+ GA +AT
Sbjct: 157 CLDNVSGARMAT 168
>gi|16765521|ref|NP_461136.1| (NC_003197) transcriptional repressor of mgl operon (GalR/LacI
family) [Salmonella typhimurium LT2]
gi|17865750|sp|P41030|GALS_SALTY Mgl repressor and galactose ultrainduction factor
gi|16420728|gb|AAL21095.1| (AE008797) GalR/LacI family transcriptional repressor of mgl operon
[Salmonella typhimurium LT2]
Length = 340
Score = 147 bits (371), Expect = 2e-35
Identities = 74/132 (56%), Positives = 97/132 (73%)
Frame = -3
Query: 519 YHPNAFSXXXXXPHARAMAXQSTETLGLIVSDVSDPFFGAMVKAVEQVAYATHNFLLIGN 340
Y PNA +A+A+A Q ++T+G++V DVSD FFGA+VKAV+ VA ++LIGN
Sbjct: 45 YRPNA--------NAQALATQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGN 96
Query: 339 GYHDAEKERQAIEQLVRHRCEALVVHAKRLSDQELCGWMQQIPGMVLINRTLPGFETRCV 160
YH+AEKER AIE L+R RC AL+VH+K L+D+EL +M QIPGMVLINR +PG+ RCV
Sbjct: 97 SYHEAEKERHAIEVLIRQRCNALIVHSKALTDRELSDFMDQIPGMVLINRIVPGYAHRCV 156
Query: 159 ALDDRYGAWLAT 124
LD+ GA +AT
Sbjct: 157 CLDNVSGARMAT 168
>gi|16130089|ref|NP_416656.1| (NC_000913) mgl repressor, galactose operon inducer [Escherichia
coli K12]
gi|2506560|sp|P25748|GALS_ECOLI Mgl repressor and galactose ultrainduction factor
gi|7442852|pir||F64983 isorepressor galS - Escherichia coli
gi|405897|gb|AAA60528.1| (U00007) galS [Escherichia coli]
gi|1788474|gb|AAC75212.1| (AE000304) mgl repressor, galactose operon inducer [Escherichia
coli K12]
gi|744185|prf||2014253AV galS gene [Escherichia coli]
Length = 346
Score = 147 bits (370), Expect = 2e-35
Identities = 74/132 (56%), Positives = 95/132 (71%)
Frame = -3
Query: 519 YHPNAFSXXXXXPHARAMAXQSTETLGLIVSDVSDPFFGAMVKAVEQVAYATHNFLLIGN 340
Y PNA +A+A+A Q ++T+G++V DVSD FFGA+VKAV+ VA ++LIGN
Sbjct: 45 YRPNA--------NAQALATQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGN 96
Query: 339 GYHDAEKERQAIEQLVRHRCEALVVHAKRLSDQELCGWMQQIPGMVLINRTLPGFETRCV 160
YH+AEKER AIE L+R RC AL+VH+K LSD EL +M IPGMVLINR +PG+ RCV
Sbjct: 97 SYHEAEKERHAIEVLIRQRCNALIVHSKALSDDELAQFMDNIPGMVLINRVVPGYAHRCV 156
Query: 159 ALDDRYGAWLAT 124
LD+ GA +AT
Sbjct: 157 CLDNLSGARMAT 168
>gi|15802707|ref|NP_288734.1| (NC_002655) mgl repressor, galactose operon inducer [Escherichia
coli O157:H7 EDL933]
gi|15832297|ref|NP_311070.1| (NC_002695) mgl repressor [Escherichia coli O157:H7]
gi|12516471|gb|AAG57289.1|AE005447_4 (AE005447) mgl repressor, galactose operon inducer [Escherichia
coli O157:H7 EDL933]
gi|13362512|dbj|BAB36466.1| (AP002560) mgl repressor [Escherichia coli O157:H7]
Length = 346
Score = 147 bits (370), Expect = 2e-35
Identities = 74/132 (56%), Positives = 95/132 (71%)
Frame = -3
Query: 519 YHPNAFSXXXXXPHARAMAXQSTETLGLIVSDVSDPFFGAMVKAVEQVAYATHNFLLIGN 340
Y PNA +A+A+A Q ++T+G++V DVSD FFGA+VKAV+ VA ++LIGN
Sbjct: 45 YRPNA--------NAQALATQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGN 96
Query: 339 GYHDAEKERQAIEQLVRHRCEALVVHAKRLSDQELCGWMQQIPGMVLINRTLPGFETRCV 160
YH+AEKER AIE L+R RC AL+VH+K LSD EL +M IPGMVLINR +PG+ RCV
Sbjct: 97 SYHEAEKERHAIEVLIRQRCNALIVHSKALSDDELAQFMDNIPGMVLINRVVPGYTHRCV 156
Query: 159 ALDDRYGAWLAT 124
LD+ GA +AT
Sbjct: 157 CLDNLSGARMAT 168
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: Aug 28, 2002 2:02 AM
Number of letters in database: 328,747,273
Number of sequences in database: 1,039,285
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,310,458
Number of Sequences: 1039285
Number of extensions: 1371773
Number of successful extensions: 5243
Number of sequences better than 10.0: 328
Number of HSP's better than 10.0 without gapping: 5050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5214
length of database: 88,091,237
effective HSP length: 105
effective length of database: 57,731,537
effective search space used: 3983476053
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)