Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1014316043-19020-2882

Query= 7A8_131_132BLASTX
         (629 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           884,168 sequences; 276,795,196 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|16127189|ref|NP_421753.1|  (NC_002696) ThiJ/PfpI family p...    69   4e-11
gi|9845302|ref|NP_064116.1|  (NC_002512) pr2 [rat cytomegalo...    33   2.6  
gi|1085433|pir||S55316  mucin (clone PGM-2B) - pig >gi|91520...    32   5.7  

Alignments
>gi|16127189|ref|NP_421753.1| (NC_002696) ThiJ/PfpI family protein [Caulobacter crescentus]
 gi|13424589|gb|AAK24921.1| (AE005960) ThiJ/PfpI family protein [Caulobacter crescentus]
          Length = 258

 Score = 68.6 bits (166), Expect = 4e-11
 Identities = 52/141 (36%), Positives = 68/141 (47%), Gaps = 4/141 (2%)
 Frame = -3

Query: 627 QFLRRMPGAEIIVASVDGADVESEGLHFMVXKILRXXXXXXXXARCDVLCVPGGSGCTQA 448
           Q L R+PGA++ VAS+ G ++E++GL F     L           CDVL VPGG G TQA
Sbjct: 57  QVLCRLPGAKVTVASLAGGEIEADGLVFARLPKLSDIET------CDVLIVPGGFGTTQA 110

Query: 447 LQDEAFMRQIR----SAGHRCSLPDLGCVPVR*S*PPPGYCWVNAPPATGLCAIA*SCFX 280
           + D  F+ +IR     A + CS+     V         G                 + F 
Sbjct: 111 MGDPDFIAEIRRLADGARYVCSVCTGSLVLA-----AAGLLKGKRAACHWAWRDQLALFG 165

Query: 279 AIPSAARVERDGXXISGGGVT 217
           A+P AARV RDG  I+GGGVT
Sbjct: 166 AVPDAARVARDGRYITGGGVT 186



>gi|9845302|ref|NP_064116.1| (NC_002512) pr2 [rat cytomegalovirus Maastricht]
 gi|9800237|gb|AAF99111.1|AF232689_2 (AF232689) pr2 [rat cytomegalovirus Maastricht]
          Length = 1240

 Score = 32.7 bits (73), Expect = 2.6
 Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
 Frame = +2

Query: 371 GTXPRSGSEHRCPAERICRMN--------ASSCNAWVQPLPPGTHSTSQRXXXXXXXXXL 526
           GT  R GS   CP    CR++        AS  +A  +     T +T+            
Sbjct: 425 GTSSRGGSSRSCPG---CRLSDATPATPPASRGDASTEGTTTTTTTTTTTTTTTTTGLGG 481

Query: 527 KILXTMKCKPSDSTSAPSTEATMISAPGM----RRRNC 628
           K   T    P  +TSAPST AT  SAP +    R R+C
Sbjct: 482 KGTGTPVLTPR-TTSAPSTTATSASAPTLPSTARSRDC 518



>gi|1085433|pir||S55316 mucin (clone PGM-2B) - pig
 gi|915207|gb|AAC48525.1| (U10281) gastric mucin [Sus scrofa]
          Length = 317

 Score = 31.6 bits (70), Expect = 5.7
 Identities = 32/129 (24%), Positives = 48/129 (36%), Gaps = 9/129 (6%)
 Frame = +2

Query: 245 PSRSTRAALGMAXK-QLQAIAHRPVAGGAFTQQ*PGGG*DQRTGTXPRSGSEHRCPAERI 421
           PS S+ A    A   Q  + +  P       Q    G     + T  +S S    P    
Sbjct: 180 PSSSSSAPTTSATSVQSSSSSSAPTTSATSVQPSSSGSAPTTSATSVQSSSSSSPPISST 239

Query: 422 CRMNASSCNAW-------VQPLPPGTH-STSQRXXXXXXXXXLKILXTMKCKPSDSTSAP 577
             +  SS ++        VQP   G+  +TS             I  T+  +PS S+SAP
Sbjct: 240 ISVQTSSSSSSPTTSTTSVQPSSSGSAPTTSATSVQPSSSSSPPISSTISVQPSSSSSAP 299

Query: 578 STEATMISA 604
           +T AT + +
Sbjct: 300 TTSATSVQS 308




  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Feb 21, 2002  1:44 AM
  Number of letters in database: 276,795,196
  Number of sequences in database:  884,168
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 211,397,557
Number of Sequences: 884168
Number of extensions: 3411083
Number of successful extensions: 8220
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8208
length of database: 276,795,196
effective HSP length: 115
effective length of database: 175,115,876
effective search space used: 16460892344
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)