Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1015586591-14283-6842

Query= 22D9_131_132_BLASTX
         (965 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           891,607 sequences; 279,182,324 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|16763661|ref|NP_459276.1|  (NC_003197) putative periplasm...    55   3e-07
gi|16121825|ref|NP_405138.1|  (NC_003143) putative exported ...    42   3e-04
gi|15601849|ref|NP_233480.1|  (NC_002506) ABC transporter, p...    32   2.0  
gi|12329060|emb|CAC05791.1|  (AL391753) ORF81, length = 296 ...    30   7.8  

Alignments
>gi|16763661|ref|NP_459276.1| (NC_003197) putative periplasmic protein [Salmonella typhimurium
           LT2]
 gi|16418778|gb|AAL19235.1| (AE008707) putative periplasmic protein [Salmonella typhimurium
           LT2]
          Length = 127

 Score = 55.1 bits (131), Expect = 3e-07
 Identities = 27/97 (27%), Positives = 48/97 (48%)
 Frame = +1

Query: 595 TYFLMSLLLGSHVVLAENSLNALSQEALYKNWLTSRCIGKSTDSERTKQDAFRSASAYLE 774
           T+ +  +L+       E      SQ  L KNW  S C+      +  K DA  +ASAYLE
Sbjct: 12  TFSISGMLVWQPSFAQEALTTQYSQSELLKNWALSHCLALVYKDDVVKNDARATASAYLE 71

Query: 775 LSKLPMDAFEQGEKLAEQYANKNSQGSVQGTYHTLDC 885
             K  ++ + + +++A++Y+     GS+   ++T+ C
Sbjct: 72  YGKQSVEIYHEIDEIAKKYSGLKYNGSISSDFNTMKC 108




 Score = 33.9 bits (76), Expect = 0.70
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +3

Query: 261 ALSVCIAEGYSAKEVKNDXXXXXRGYTEFGDYSLEAAYRRQGAGKRISG 407
           ALS C+A  Y    VKND       Y E+G  S+E  +      K+ SG
Sbjct: 44  ALSHCLALVYKDDVVKNDARATASAYLEYGKQSVEIYHEIDEIAKKYSG 92



>gi|16121825|ref|NP_405138.1| (NC_003143) putative exported protein [Yersinia pestis]
 gi|15979595|emb|CAC90375.1| (AJ414149) putative exported protein [Yersinia pestis]
          Length = 144

 Score = 42.0 bits (97), Expect = 0.003
 Identities = 20/75 (26%), Positives = 40/75 (52%)
 Frame = +1

Query: 616 LLGSHVVLAENSLNALSQEALYKNWLTSRCIGKSTDSERTKQDAFRSASAYLELSKLPMD 795
           L+    + AE + N + Q+   +N+  S C+ +         +AF +  AY+EL   P++
Sbjct: 34  LISFSTLAAEVNQNKVQQKNNLENFALSICLAEGFPDGEINSEAFSAVGAYVELGAYPVE 93

Query: 796 AFEQGEKLAEQYANK 840
           A+E+  +LA+++  K
Sbjct: 94  AYEEVSELAKKFLEK 108




 Score = 34.7 bits (78), Expect(2) = 3e-04
 Identities = 14/36 (38%), Positives = 21/36 (57%)
 Frame = +3

Query: 261 ALSVCIAEGYSAKEVKNDXXXXXRGYTEFGDYSLEA 368
           ALS+C+AEG+   E+ ++       Y E G Y +EA
Sbjct: 59  ALSICLAEGFPDGEINSEAFSAVGAYVELGAYPVEA 94




 Score = 29.6 bits (65), Expect(2) = 3e-04
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +1

Query: 379 VRALAKEFLAKPYDSMSGE-PMTMAKCIVLTKXRLVTA 489
           V  LAK+FL K Y S +GE  +T+ KCI L++   ++A
Sbjct: 98  VSELAKKFLEKKYISKNGESKLTVMKCIDLSQSSELSA 135



>gi|15601849|ref|NP_233480.1| (NC_002506) ABC transporter, permease protein [Vibrio cholerae]
 gi|11354371|pir||G82377 ABC transporter, permease protein VCA1100 [imported] - Vibrio
           cholerae (group O1 strain N16961)
 gi|9658547|gb|AAF96992.1| (AE004435) ABC transporter, permease protein [Vibrio cholerae]
          Length = 270

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = +2

Query: 56  PGWNDPADTQHYGTXNLLRSLLLSKIQRGIYMVTKIKSLCVASMIFLGCIQSAQA 220
           P W +P  T HYG  N  R  L S I   + M       CV+S   LG +    A
Sbjct: 53  PSWGEPLGTDHYGRSNFAR--LSSAIATSLTMAV----ACVSSSALLGLVTGVVA 101



>gi|12329060|emb|CAC05791.1| (AL391753) ORF81, length = 296 aa, similarities with
           transcriptional activators of the AraC family [Shigella
           flexneri]
          Length = 296

 Score = 30.4 bits (67), Expect = 7.8
 Identities = 19/74 (25%), Positives = 38/74 (50%), Gaps = 2/74 (2%)
 Frame = +1

Query: 556 DGSYQRLSRMRRYTYFLMSLLLGSHVVLAENSLNALSQEALYKNWLTSRCIGKSTDSERT 735
           D   +RL ++ +       L+   +V++  +S+     E    +WL S+C  + TD+++T
Sbjct: 103 DHDIERLKKISK-----AQLISPDYVLIDFSSVGGGGDEPYAMSWLISQCAHQCTDNKKT 157

Query: 736 KQDAF--RSASAYL 771
           + DA   +  S+YL
Sbjct: 158 ETDAIYDKVRSSYL 171




  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 6, 2002  1:29 AM
  Number of letters in database: 279,182,324
  Number of sequences in database:  0
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,368,016
Number of Sequences: 0
Number of extensions: 2231893
Number of successful extensions: 5983
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5940
length of database: 74,921,317
effective HSP length: 111
effective length of database: 47,640,292
effective search space used: 10004461320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)