Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.RID: 1015586362-11718-15463
Query= 21C1_131_132_BLASTX (1579 letters)
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 891,607 sequences; 279,182,324 total letters
If you have any problems or questions with the results of this search
please refer to the BLAST FAQsScore E Sequences producing significant alignments: (bits) Value gi|16131262|ref|NP_417843.1| (NC_000913) tryptophan tRNA sy... 100 2e-20 gi|15803887|ref|NP_289923.1| (NC_002655) tryptophan tRNA sy... 100 2e-20 gi|1711656|sp|P00954|SYW_ECOLI Tryptophanyl-tRNA synthetase... 99 3e-20 gi|41228|emb|CAA79669.1| (Z19601) ORF, trpS. Hall C.V., van... 99 3e-20 gi|15603486|ref|NP_246560.1| (NC_002663) TrpS [Pasteurella ... 99 3e-20 gi|16762806|ref|NP_458423.1| (NC_003198) tryptophanyl-tRNA ... 98 6e-20 gi|16120500|ref|NP_403813.1| (NC_003143) tryptophanyl-tRNA ... 96 2e-19 gi|11992138|gb|AAG42458.1|AF308467_4 (AF308467) tryptophany... 94 1e-18 gi|16272580|ref|NP_438797.1| (NC_000907) tryptophanyl-tRNA ... 91 9e-18 gi|15642618|ref|NP_232251.1| (NC_002505) tryptophanyl-tRNA ... 59 4e-08 gi|15923986|ref|NP_371520.1| (NC_002758) tryptophanyl-tRNA ... 57 1e-07 gi|15617130|ref|NP_240343.1| (NC_002528) tryptophanyl-tRNA ... 53 3e-06 gi|16078207|ref|NP_389024.1| (NC_000964) tryptophanyl-tRNA ... 52 4e-06 gi|7649569|emb|CAB89058.1| (AL353872) tryptophanyl-tRNA syn... 51 1e-05 gi|16974811|pdb|1I6K|A Chain A, 1.7 High Resolution Experim... 51 1e-05 gi|68506|pir||YWBSF tryptophan--tRNA ligase (EC 6.1.1.2) - ... 51 1e-05 gi|135187|sp|P00953|SYW_BACST Tryptophanyl-tRNA synthetase ... 51 1e-05 gi|7546192|pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of L... 51 1e-05 gi|15615433|ref|NP_243736.1| (NC_002570) tryptophanyl-tRNA ... 50 2e-05 gi|16801365|ref|NP_471633.1| (NC_003212) tryptophanyl-tRNA ... 49 4e-05 gi|42171|emb|CAA25877.1| (X01740) pif C protein [Escherichi... 48 7e-05 gi|129877|sp|P10030|PIFC_ECOLI TRANSCRITPIONAL REPRESSOR PI... 48 7e-05 gi|16804237|ref|NP_465722.1| (NC_003210) tryptophanyl-tRNA ... 48 9e-05 gi|13357733|ref|NP_078007.1| (NC_002162) tryptophanyl-tRNA ... 45 4e-04 gi|15610472|ref|NP_217853.1| (NC_000962) trpS [Mycobacteriu... 44 0.001 gi|15827289|ref|NP_301552.1| (NC_002677) tryptophanyl tRNA ... 44 0.001 gi|281920|pir||S28007 probable ATP-binding protein - Escher... 41 0.011 gi|15893914|ref|NP_347263.1| (NC_003030) Tryptophan-tRNA sy... 40 0.024 gi|15901108|ref|NP_345712.1| (NC_003028) conserved hypothet... 39 0.032 gi|15903169|ref|NP_358719.1| (NC_003098) chromosome condens... 39 0.032 gi|15829216|ref|NP_326576.1| (NC_002771) TRYPTOPHANYL-TRNA ... 39 0.041 gi|7481833|pir||T36283 tryptophanyl tRNA synthetase - Strep... 39 0.054 gi|15674632|ref|NP_268806.1| (NC_002737) putative chromosom... 37 0.12 gi|17865482|sp|P58481|HTPG_STRCO Chaperone protein htpG (He... 37 0.12 gi|17934801|ref|NP_531591.1| (NC_003304) ABC transporter, n... 37 0.16 gi|15888233|ref|NP_353914.1| (NC_003062) AGR_C_1628p [Agrob... 37 0.16 gi|16799384|ref|NP_469652.1| (NC_003212) similar to ABC tra... 37 0.21 gi|8894821|emb|CAB96017.1| (AL360055) putative ABC transpor... 36 0.27 gi|13096783|pdb|1E69|A Chain A, Smc Head Domain From Thermo... 36 0.35 gi|15643938|ref|NP_228987.1| (NC_000853) chromosome segrega... 36 0.35 gi|15642383|ref|NP_232016.1| (NC_002505) conserved hypothet... 36 0.35 gi|5830765|emb|CAB54591.1| (AJ249205) putative ATP binding ... 36 0.35 gi|15644384|ref|NP_229436.1| (NC_000853) conserved hypothet... 35 0.46 gi|16800310|ref|NP_470578.1| (NC_003212) similar to bacteri... 35 0.60 gi|16801701|ref|NP_471969.1| (NC_003212) similar to phospha... 35 0.60 gi|15827858|ref|NP_302121.1| (NC_002677) possible cell divi... 35 0.60 gi|16804534|ref|NP_466019.1| (NC_003210) similar to phospha... 35 0.60 gi|15616533|ref|NP_244839.1| (NC_002570) ABC transporter re... 35 0.60 gi|15894078|ref|NP_347427.1| (NC_003030) Ferrichrome ABC tr... 35 0.78 gi|15807275|ref|NP_296005.1| (NC_001263) manganese ABC tran... 35 0.78Alignments >gi|16131262|ref|NP_417843.1| (NC_000913) tryptophan tRNA synthetase [Escherichia coli K12] gi|7428461|pir||YWEC tryptophan--tRNA ligase (EC 6.1.1.2) - Escherichia coli gi|606318|gb|AAA58181.1| (U18997) CG Site No. 67 [Escherichia coli] gi|1789786|gb|AAC76409.1| (AE000414) tryptophan tRNA synthetase [Escherichia coli K12] Length = 334 Score = 99.8 bits (247), Expect = 2e-20 Identities = 60/112 (53%), Positives = 71/112 (62%), Gaps = 2/112 (1%) Frame = -2 Query: 1578 PVVRYDVVNKAGVSNLLDILAGVTGKSIAQLEAEFEGQMYGHLKGAVAEAVSGMLGELQQ 1399 PVVRYDV NKAGVSNLLDIL+ VTG+SI +LE +FEG+MYGHLKG VA+AVSGML ELQ+ Sbjct: 231 PVVRYDVQNKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVADAVSGMLTELQE 290 Query: 1398 TFGQGVDRHRFSGGPVF--QGGDQGFRKA*VHLTEHSGVLLR*RCIVMIAKP 1249 + HRF F Q G KA H + + I +AKP Sbjct: 291 RY------HRFRNDEAFLQQVMKDGAEKASAHASRTLKAVY--EAIGFVAKP 334>gi|15803887|ref|NP_289923.1| (NC_002655) tryptophan tRNA synthetase [Escherichia coli O157:H7 EDL933] gi|15833480|ref|NP_312253.1| (NC_002695) tryptophan tRNA synthetase [Escherichia coli O157:H7] gi|12518004|gb|AAG58484.1|AE005560_10 (AE005560) tryptophan tRNA synthetase [Escherichia coli O157:H7 EDL933] gi|13363700|dbj|BAB37649.1| (AP002565) tryptophan tRNA synthetase [Escherichia coli O157:H7] Length = 334 Score = 99.8 bits (247), Expect = 2e-20 Identities = 60/112 (53%), Positives = 71/112 (62%), Gaps = 2/112 (1%) Frame = -2 Query: 1578 PVVRYDVVNKAGVSNLLDILAGVTGKSIAQLEAEFEGQMYGHLKGAVAEAVSGMLGELQQ 1399 PVVRYDV NKAGVSNLLDIL+ VTG+SI +LE +FEG+MYGHLKG VA+AVSGML ELQ+ Sbjct: 231 PVVRYDVQNKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVADAVSGMLTELQE 290 Query: 1398 TFGQGVDRHRFSGGPVF--QGGDQGFRKA*VHLTEHSGVLLR*RCIVMIAKP 1249 + HRF F Q G KA H + + I +AKP Sbjct: 291 RY------HRFRNDEAFLQQVMKDGAEKASAHASRTLKAVY--EAIGFVAKP 334>gi|1711656|sp|P00954|SYW_ECOLI Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TRPRS) gi|1055285|gb|AAA92300.1| (U38647) tryptophanyl-tRNA synthetase [Escherichia coli] Length = 334 Score = 99.4 bits (246), Expect = 3e-20 Identities = 56/92 (60%), Positives = 64/92 (68%), Gaps = 2/92 (2%) Frame = -2 Query: 1578 PVVRYDVVNKAGVSNLLDILAGVTGKSIAQLEAEFEGQMYGHLKGAVAEAVSGMLGELQQ 1399 PVVRYDV NKAGVSNLLDIL+ VTG+SI +LE +FEG+MYGHLKG VA+AVSGML ELQ+ Sbjct: 231 PVVRYDVQNKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVADAVSGMLTELQE 290 Query: 1398 TFGQGVDRHRFSGGPVF--QGGDQGFRKA*VH 1309 + HRF F Q G KA H Sbjct: 291 RY------HRFRNDEAFLQQVMKDGAEKASAH 316>gi|41228|emb|CAA79669.1| (Z19601) ORF, trpS. Hall C.V., van Cleemput M., Muench K.H., Yanofsky C.; J. Biol. Chem. 257(11):6132-6136(1982) [Escherichia coli] gi|43200|emb|CAA23670.1| (V00371) tryptophanyl-tRNA synthetase [Escherichia coli] Length = 334 Score = 99.4 bits (246), Expect = 3e-20 Identities = 56/92 (60%), Positives = 64/92 (68%), Gaps = 2/92 (2%) Frame = -2 Query: 1578 PVVRYDVVNKAGVSNLLDILAGVTGKSIAQLEAEFEGQMYGHLKGAVAEAVSGMLGELQQ 1399 PVVRYDV NKAGVSNLLDIL+ VTG+SI +LE +FEG+MYGHLKG VA+AVSGML ELQ+ Sbjct: 231 PVVRYDVQNKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVADAVSGMLTELQE 290 Query: 1398 TFGQGVDRHRFSGGPVF--QGGDQGFRKA*VH 1309 + HRF F Q G KA H Sbjct: 291 RY------HRFRNDEAFLQQVMKDGAEKASAH 316>gi|15603486|ref|NP_246560.1| (NC_002663) TrpS [Pasteurella multocida] gi|13431912|sp|P57956|SYW_PASMU Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS) gi|12722021|gb|AAK03705.1| (AE006199) TrpS [Pasteurella multocida] Length = 333 Score = 99.0 bits (245), Expect = 3e-20 Identities = 49/62 (79%), Positives = 54/62 (87%) Frame = -2 Query: 1578 PVVRYDVVNKAGVSNLLDILAGVTGKSIAQLEAEFEGQMYGHLKGAVAEAVSGMLGELQQ 1399 PVVRYDV NKAGVSNLLDIL+GVTGKSIA+LE EFEG+MYGHLKG VA+ VS ML LQ+ Sbjct: 231 PVVRYDVQNKAGVSNLLDILSGVTGKSIAELETEFEGKMYGHLKGTVADEVSAMLTTLQE 290 Query: 1398 TF 1393 F Sbjct: 291 RF 292>gi|16762806|ref|NP_458423.1| (NC_003198) tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi] gi|16766769|ref|NP_462384.1| (NC_003197) tryptophan tRNA synthetase [Salmonella typhimurium LT2] gi|16422039|gb|AAL22343.1| (AE008860) tryptophan tRNA synthetase [Salmonella typhimurium LT2] gi|16505112|emb|CAD08133.1| (AL627281) tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi] Length = 334 Score = 98.2 bits (243), Expect = 6e-20 Identities = 51/77 (66%), Positives = 58/77 (75%) Frame = -2 Query: 1578 PVVRYDVVNKAGVSNLLDILAGVTGKSIAQLEAEFEGQMYGHLKGAVAEAVSGMLGELQQ 1399 PVVRYDV KAGVSNLLDIL+ VTG+SI +LE +FEG+MYGHLKG VAEAVSGML ELQ+ Sbjct: 231 PVVRYDVKEKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVAEAVSGMLSELQE 290 Query: 1398 TFGQGVDRHRFSGGPVF 1348 + HRF F Sbjct: 291 RY------HRFRNDEAF 301>gi|16120500|ref|NP_403813.1| (NC_003143) tryptophanyl-tRNA synthetase [Yersinia pestis] gi|15978262|emb|CAC89020.1| (AJ414141) tryptophanyl-tRNA synthetase [Yersinia pestis] Length = 346 Score = 96.3 bits (238), Expect = 2e-19 Identities = 46/61 (75%), Positives = 55/61 (89%) Frame = -2 Query: 1575 VVRYDVVNKAGVSNLLDILAGVTGKSIAQLEAEFEGQMYGHLKGAVAEAVSGMLGELQQT 1396 ++RYDV KAGVSNLLDIL+GVTG+SI +LEA+F GQMYGHLKGAVA+AVSGML ELQ+ Sbjct: 244 LIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLKGAVADAVSGMLSELQER 303 Query: 1395 F 1393 + Sbjct: 304 Y 304>gi|11992138|gb|AAG42458.1|AF308467_4 (AF308467) tryptophanyl-tRNA synthetase [Klebsiella aerogenes] Length = 334 Score = 94.0 bits (232), Expect = 1e-18 Identities = 49/77 (63%), Positives = 57/77 (73%) Frame = -2 Query: 1578 PVVRYDVVNKAGVSNLLDILAGVTGKSIAQLEAEFEGQMYGHLKGAVAEAVSGMLGELQQ 1399 PVVRYD+ KAGVSNLLDIL+ VTGK+I +LE FEG+MYGHLKG VAEAVSGML +LQ+ Sbjct: 231 PVVRYDLKEKAGVSNLLDILSAVTGKTIPELEQHFEGKMYGHLKGEVAEAVSGMLIDLQE 290 Query: 1398 TFGQGVDRHRFSGGPVF 1348 + HRF F Sbjct: 291 RY------HRFRNDEAF 301>gi|16272580|ref|NP_438797.1| (NC_000907) tryptophanyl-tRNA synthetase (trpS) [Haemophilus influenzae Rd] gi|1174552|sp|P43835|SYW_HAEIN Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TRPRS) gi|1075401|pir||C64083 tryptophan--tRNA ligase (EC 6.1.1.2) - Haemophilus influenzae (strain Rd KW20) gi|1573633|gb|AAC22296.1| (U32746) tryptophanyl-tRNA synthetase (trpS) [Haemophilus influenzae Rd] Length = 334 Score = 90.9 bits (224), Expect = 9e-18 Identities = 50/87 (57%), Positives = 59/87 (67%) Frame = -2 Query: 1578 PVVRYDVVNKAGVSNLLDILAGVTGKSIAQLEAEFEGQMYGHLKGAVAEAVSGMLGELQQ 1399 PVVRYDV NKAGVSNLLDIL+ VT K IA LE EFEG+MYGHLK AVA+ VS +L LQ+ Sbjct: 231 PVVRYDVQNKAGVSNLLDILSAVTDKPIADLEKEFEGKMYGHLKTAVADEVSTLLASLQE 290 Query: 1398 TFGQGVDRHRFSGGPVFQGGDQGFRKA 1318 F Q + + QG ++ KA Sbjct: 291 RFHQYRNDETLLDNILRQGAEKARAKA 317>gi|15642618|ref|NP_232251.1| (NC_002505) tryptophanyl-tRNA synthetase [Vibrio cholerae] gi|11271082|pir||E82052 tryptophanyl-tRNA synthetase VC2623 [imported] - Vibrio cholerae (group O1 strain N16961) gi|9657213|gb|AAF95764.1| (AE004329) tryptophanyl-tRNA synthetase [Vibrio cholerae] Length = 365 Score = 58.9 bits (141), Expect = 4e-08 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 1/88 (1%) Frame = -2 Query: 1578 PVVRYDVVNKAGVSNLLDILAGVTGKSIAQLEAEFEG-QMYGHLKGAVAEAVSGMLGELQ 1402 P + YDV NKAG++NL+ + + TGK+ A++EA++ G +MYG K V EAV ML +Q Sbjct: 261 PRIAYDVENKAGIANLMGLYSAATGKTFAEIEAQYAGVEMYGPFKKDVGEAVVAMLEPVQ 320 Query: 1401 QTFGQGVDRHRFSGGPVFQGGDQGFRKA 1318 + + + + + G ++ KA Sbjct: 321 AEYQRIRNDREYLNSVMRDGAEKASAKA 348Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 6, 2002 1:29 AM Number of letters in database: 279,182,324 Number of sequences in database: 0 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 199,225,574 Number of Sequences: 0 Number of extensions: 4075404 Number of successful extensions: 13415 Number of sequences better than 10.0: 210 Number of HSP's better than 10.0 without gapping: 12710 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 13413 length of database: 74,921,317 effective HSP length: 116 effective length of database: 46,411,417 effective search space used: 18982269553 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)