Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.RID: 1015585823-5182-28893
Query= 18F3_131_132_BLASTX (779 letters)
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 891,607 sequences; 279,182,324 total letters
If you have any problems or questions with the results of this search
please refer to the BLAST FAQsScore E Sequences producing significant alignments: (bits) Value gi|16648662|gb|AAL25633.1| (AY057452) UDP-glucose 4-epimera... 114 2e-40 gi|15802522|ref|NP_288548.1| (NC_002655) putative UDP-galac... 106 3e-34 gi|3135686|gb|AAD05466.1| (AF064070) putative epimerase/deh... 54 6e-07 gi|13488320|ref|NP_085591.1| (NC_002679) hypothetical prote... 49 2e-05 gi|16519875|ref|NP_443995.1| (NC_000914) Y4nL [Rhizobium sp... 49 2e-05 gi|11270130|pir||T44336 hypothetical protein wbfT [imported... 48 3e-05 gi|3724321|dbj|BAA33610.1| (AB012956) probable UDP-galactos... 48 3e-05 gi|2494666|sp|Q56623|GALE_VIBCH UDP-GLUCOSE 4-EPIMERASE (GA... 48 3e-05 gi|1929426|emb|CAA69124.1| (Y07788) ORF35x7 [Vibrio cholerae] 45 3e-04 gi|15640291|ref|NP_229918.1| (NC_002505) UDP-glucose 4-epim... 44 4e-04 gi|17987520|ref|NP_540154.1| (NC_003317) UDP-GLUCOSE 4-EPIM... 42 0.001 gi|15616277|ref|NP_244582.1| (NC_002570) UDP-glucose 4-epim... 42 0.002 gi|6690124|gb|AAF23991.1| (AF035937) WbpV [Pseudomonas aeru... 41 0.003 gi|16519870|ref|NP_443990.1| (NC_000914) Y4nG [Rhizobium sp... 39 0.012 gi|11023524|gb|AAG26481.1|AF285774_21 (AF285774) putative d... 38 0.035 gi|17988785|ref|NP_541418.1| (NC_003318) DTDP-GLUCOSE 4,6-D... 37 0.046 gi|8118244|gb|AAF72958.1|AF236052_9 (AF236052) WbjFT [Pseud... 37 0.046 gi|17544806|ref|NP_518208.1| (NC_003295) PUTATIVE NADH-UBIQ... 37 0.046 gi|5199125|gb|AAD40723.1|AF048749_19 (AF048749) putative ep... 37 0.046 gi|13476290|ref|NP_107860.1| (NC_002678) putative epimerase... 37 0.078 gi|1754652|gb|AAB39483.1| (AF147795) WbjF [Pseudomonas aeru... 36 0.10 gi|6688594|emb|CAB65203.1| (AJ007311) hypothetical protein ... 36 0.13 gi|15599557|ref|NP_253051.1| (NC_002516) probable oxidoredu... 35 0.17 gi|1773353|gb|AAC46097.1| (U81973) Cap5N [Staphylococcus au... 35 0.30 gi|15923152|ref|NP_370686.1| (NC_002758) capsular polysacch... 35 0.30 gi|15838423|ref|NP_299111.1| (NC_002488) NAD(P)H steroid de... 33 0.66 gi|13471322|ref|NP_102891.1| (NC_002678) NDP-glucose 4,6-de... 33 0.66 gi|15828047|ref|NP_302310.1| (NC_002677) probable cholester... 33 0.86 gi|7480309|pir||T34919 oxidoreductase - Streptomyces coelic... 33 1.1 gi|13488052|ref|NP_085598.1| (NC_002679) hypothetical prote... 33 1.1 gi|16122221|ref|NP_405534.1| (NC_003143) putative dehydroge... 32 2.5 gi|16579853|gb|AAL26668.1|AAL26668 (U10927) type 8 capsule ... 31 3.3 gi|1657653|gb|AAB49443.1| (U73374) Cap8N [Staphylococcus au... 31 3.3 gi|15800626|ref|NP_286640.1| (NC_002655) putative nucleotid... 31 3.3 gi|15830208|ref|NP_308981.1| (NC_002695) putative nucleotid... 31 3.3 gi|16128836|ref|NP_415389.1| (NC_000913) putative nucleotid... 31 3.3 gi|15610641|ref|NP_218022.1| (NC_000962) fadE27 [Mycobacter... 31 4.3 gi|17549657|ref|NP_522997.1| (NC_003296) PROBABLE TRNA SYNT... 30 5.6 gi|15598342|ref|NP_251836.1| (NC_002516) probable NAD-depen... 30 5.6 gi|1545860|gb|AAC45865.1| (U50396) WbpK [Pseudomonas aerugi... 30 5.6 gi|16121635|ref|NP_404948.1| (NC_003143) conserved hypothet... 30 7.3 gi|15964083|ref|NP_384436.1| (NC_003047) PUTATIVE OXIDOREDU... 30 7.3 gi|15887645|ref|NP_353326.1| (NC_003062) AGR_C_511p [Agroba... 30 9.5 gi|17934212|ref|NP_531002.1| (NC_003304) NADH-ubiquinone ox... 30 9.5Alignments >gi|16648662|gb|AAL25633.1| (AY057452) UDP-glucose 4-epimerase [Edwardsiella ictaluri] Length = 323 Score = 114 bits (286), Expect(3) = 2e-40 Identities = 56/91 (61%), Positives = 66/91 (71%) Frame = -1 Query: 773 YGKSKLEAEYVYEAWRKADSANKLTIIRPTVVFGEGNRGNVYNLFRQIASGRFVMIGSGN 594 YGKSKLEAE+ Y+AW+ L +RPTVVFGE NRGNVYNLFRQIASG+F+MIG G Sbjct: 131 YGKSKLEAEFAYDAWQAKVPERTLVTVRPTVVFGENNRGNVYNLFRQIASGKFLMIGPGL 190 Query: 593 NMKSMAYVENIAARLEHALDQQSSYQVSNYV 501 N KSMAYVEN+AA L + + V NY+ Sbjct: 191 NQKSMAYVENMAAFLRFSTTMGAGRHVFNYI 221Score = 58.2 bits (139), Expect(3) = 2e-40 Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%) Frame = -2 Query: 346 KKFPISRVRVQKFCARTQFKSN--VQNNFVAPVELDSAIERTIKHEFSDR 203 ++FP+S +RV+KFCARTQFKSN Q F APV L+ I T+++EF ++ Sbjct: 269 REFPVSSIRVKKFCARTQFKSNHIAQTGFKAPVTLEQGIANTVRYEFLEK 318Score = 33.9 bits (76), Expect(3) = 2e-40 Identities = 17/44 (38%), Positives = 25/44 (56%) Frame = -3 Query: 480 MNQLVDVISSSLGRENKTIRIPYVVGICGXQLRXDRLDVVSKIS 349 MN L VI ++L R IRIPY VG+ G D+++K++ Sbjct: 228 MNDLTGVICTALHRHKNNIRIPYAVGLLGGYC----FDILAKVT 267>gi|15802522|ref|NP_288548.1| (NC_002655) putative UDP-galactose 4-epimerase [Escherichia coli O157:H7 EDL933] gi|15832101|ref|NP_310874.1| (NC_002695) putative UDP-galactose 4-epimerase [Escherichia coli O157:H7] gi|12516233|gb|AAG57102.1|AE005430_2 (AE005430) putative UDP-galactose 4-epimerase [Escherichia coli O157:H7 EDL933] gi|13362315|dbj|BAB36270.1| (AP002559) putative UDP-galactose 4-epimerase [Escherichia coli O157:H7] gi|18266396|gb|AAL67550.1|AF461121_1 (AF461121) UDP-GlcNAc 4-epimerase Gne [Escherichia coli] Length = 331 Score = 106 bits (264), Expect(3) = 3e-34 Identities = 54/95 (56%), Positives = 69/95 (71%), Gaps = 2/95 (2%) Frame = -1 Query: 779 DHYGKSKLEAEYVYEAW-RKADSANKLTIIRPTVVFGEGNRGNVYNLFRQIASGRFVMIG 603 +HYGKSK +AE V W KA + LTIIRPTV+FGE NRGNVYNL +QIA G+F+M+G Sbjct: 130 NHYGKSKWQAEEVLREWYNKAPTERSLTIIRPTVIFGERNRGNVYNLLKQIAGGKFMMVG 189 Query: 602 SGNNMKSMAYVENIAARLEHAL-DQQSSYQVSNYV 501 +G N KSMAYV NI +++ L + + Y+V NYV Sbjct: 190 AGTNYKSMAYVGNIVEFIKYKLKNVAAGYEVYNYV 224Score = 47.0 bits (110), Expect(3) = 3e-34 Identities = 22/47 (46%), Positives = 32/47 (67%), Gaps = 2/47 (4%) Frame = -2 Query: 346 KKFPISRVRVQKFCARTQFKSNV--QNNFVAPVELDSAIERTIKHEF 212 KK+ +S VRV+KFCA TQF + + FVAP L ++RT+++EF Sbjct: 272 KKYAVSSVRVKKFCATTQFDATKVHSSGFVAPYTLSQGLDRTLQYEF 318Score = 32.3 bits (72), Expect(3) = 3e-34 Identities = 17/48 (35%), Positives = 28/48 (57%) Frame = -3 Query: 486 LRMNQLVDVISSSLGRENKTIRIPYVVGICGXQLRXDRLDVVSKISRK 343 L MNQLV + SL ++ ++ +PY +G+ G D++SKI+ K Sbjct: 229 LNMNQLVAEVEQSLNKKIPSMHLPYPLGMLGGYC----FDILSKITGK 272>gi|3135686|gb|AAD05466.1| (AF064070) putative epimerase/dehydratase WbiG [Burkholderia pseudomallei] gi|13518105|gb|AAK27403.1| (AY028370) putative epimerase/dehydratase [Burkholderia mallei] Length = 321 Score = 53.5 bits (127), Expect = 6e-07 Identities = 30/74 (40%), Positives = 45/74 (60%) Frame = -1 Query: 779 DHYGKSKLEAEYVYEAWRKADSANKLTIIRPTVVFGEGNRGNVYNLFRQIASGRFVMIGS 600 D YG+SKLEAE E R S + + I+RP +V+G G R N +L R ++ G + +G+ Sbjct: 140 DAYGRSKLEAERALEQLRDELSFDTV-IVRPPLVYGPGVRANFLSLMRAVSRGVPLPLGA 198 Query: 599 GNNMKSMAYVENIA 558 +SM YV+N+A Sbjct: 199 VRARRSMVYVDNLA 212>gi|13488320|ref|NP_085591.1| (NC_002679) hypothetical protein [Mesorhizobium loti] gi|14028446|dbj|BAB54998.1| (AP003016) hypothetical protein [Mesorhizobium loti] Length = 356 Score = 48.9 bits (115), Expect = 2e-05 Identities = 23/72 (31%), Positives = 38/72 (51%) Frame = -1 Query: 773 YGKSKLEAEYVYEAWRKADSANKLTIIRPTVVFGEGNRGNVYNLFRQIASGRFVMIGSGN 594 YG+SK++ E A A S ++ I+R +G F+ + G+F ++GSG Sbjct: 160 YGRSKMQMEKALRAELAAGSPMEVVIVRAPWFYGPNQPQRQTLFFKMVKDGKFPIVGSGR 219 Query: 593 NMKSMAYVENIA 558 N +SM Y +N+A Sbjct: 220 NRRSMGYTDNLA 231>gi|16519875|ref|NP_443995.1| (NC_000914) Y4nL [Rhizobium sp. NGR234] gi|2496719|sp|P55584|Y4NL_RHISN HYPOTHETICAL 38.7 KD PROTEIN Y4NL gi|2182547|gb|AAB91791.1| (AE000087) Y4nL [Rhizobium sp. NGR234] Length = 356 Score = 48.5 bits (114), Expect = 2e-05 Identities = 24/72 (33%), Positives = 37/72 (51%) Frame = -1 Query: 773 YGKSKLEAEYVYEAWRKADSANKLTIIRPTVVFGEGNRGNVYNLFRQIASGRFVMIGSGN 594 YG+SK+ E A A S ++ I+R +G F+ + G+F +IGSG Sbjct: 160 YGRSKMLMERALRAEVAAGSTMEIVIVRAPWFYGPNQPSRQTLFFKMVKEGKFPIIGSGR 219 Query: 593 NMKSMAYVENIA 558 N +SM Y +N+A Sbjct: 220 NRRSMGYTDNLA 231>gi|11270130|pir||T44336 hypothetical protein wbfT [imported] - Vibrio cholerae gi|3721690|dbj|BAA33640.1| (AB012957) probable UDP-galactose 4-epimerase [Vibrio cholerae] Length = 321 Score = 48.1 bits (113), Expect = 3e-05 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%) Frame = -1 Query: 779 DHYGKSKLEAEYVYEAWRKADSANKLTIIRPTVVFGEGNRGNVYNLFRQIASGRFVMIGS 600 D YG SK EAE A K DS+ ++ IIRPT+V+G G + N +L R ++ G + GS Sbjct: 140 DDYGLSKSEAEKQLVALAK-DSSMEVVIIRPTIVYGPGVKANFASLMRLVSKGIPLPFGS 198 Query: 599 -GNNMKSMAYVENIAARLEHALD 534 N +S+ + N+ + +D Sbjct: 199 ITQNKRSLVSINNLVDLIVTCID 221>gi|3724321|dbj|BAA33610.1| (AB012956) probable UDP-galactose 4-epimerase [Vibrio cholerae] Length = 328 Score = 48.1 bits (113), Expect = 3e-05 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%) Frame = -1 Query: 779 DHYGKSKLEAEYVYEAWRKADSANKLTIIRPTVVFGEGNRGNVYNLFRQIASGRFVMIGS 600 D YG SK EAE A K DS+ ++ IIRPT+V+G G + N +L R ++ G + GS Sbjct: 147 DDYGLSKSEAEKQLVALAK-DSSMEVVIIRPTIVYGPGVKANFASLMRLVSKGIPLPFGS 205 Query: 599 -GNNMKSMAYVENIAARLEHALD 534 N +S+ + N+ + +D Sbjct: 206 ITQNKRSLVSINNLVDLIVTCID 228>gi|2494666|sp|Q56623|GALE_VIBCH UDP-GLUCOSE 4-EPIMERASE (GALACTOWALDENASE) (UDP-GALACTOSE 4-EPIMERASE) gi|7467526|pir||S70885 UDP-galactose 4-epimerase galE homolog - Vibrio cholerae gi|1230582|gb|AAC46247.1| (U47057) UDP-galactose 4-epimerase [Vibrio cholerae O139] gi|1588976|prf||2209416F UDP-galactose 4-epimerase [Vibrio cholerae] Length = 328 Score = 48.1 bits (113), Expect = 3e-05 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%) Frame = -1 Query: 779 DHYGKSKLEAEYVYEAWRKADSANKLTIIRPTVVFGEGNRGNVYNLFRQIASGRFVMIGS 600 D YG SK EAE A K DS+ ++ IIRPT+V+G G + N +L R ++ G + GS Sbjct: 147 DDYGLSKSEAEKQLVALAK-DSSMEVVIIRPTIVYGPGVKANFASLMRLVSKGIPLPFGS 205 Query: 599 -GNNMKSMAYVENIAARLEHALD 534 N +S+ + N+ + +D Sbjct: 206 ITQNKRSLVSINNLVDLIVTCID 228>gi|1929426|emb|CAA69124.1| (Y07788) ORF35x7 [Vibrio cholerae] Length = 323 Score = 44.7 bits (104), Expect = 3e-04 Identities = 24/73 (32%), Positives = 42/73 (56%) Frame = -1 Query: 779 DHYGKSKLEAEYVYEAWRKADSANKLTIIRPTVVFGEGNRGNVYNLFRQIASGRFVMIGS 600 D YG SK EAE A++ ++ IIRP +V+GEG + N ++ + + +G+ Sbjct: 143 DPYGLSKFEAEQQLLELA-AETGLEVVIIRPPLVYGEGVKANFLSMMNWVKKQIPLPLGA 201 Query: 599 GNNMKSMAYVENI 561 NM+S+ Y++N+ Sbjct: 202 VGNMRSLVYLDNL 214>gi|15640291|ref|NP_229918.1| (NC_002505) UDP-glucose 4-epimerase [Vibrio cholerae] gi|11356305|pir||D82345 UDP-glucose 4-epimerase VC0262 [imported] - Vibrio cholerae (group O1 strain N16961) gi|9654671|gb|AAF93437.1| (AE004114) UDP-glucose 4-epimerase [Vibrio cholerae] Length = 323 Score = 44.3 bits (103), Expect = 4e-04 Identities = 24/73 (32%), Positives = 42/73 (56%) Frame = -1 Query: 779 DHYGKSKLEAEYVYEAWRKADSANKLTIIRPTVVFGEGNRGNVYNLFRQIASGRFVMIGS 600 D YG SK EAE A++ ++ IIRP +V+GEG + N ++ + + +G+ Sbjct: 143 DPYGLSKYEAEQQLLELA-AETGLEVVIIRPPLVYGEGVKANFLSMMNWVKKQIPLPLGA 201 Query: 599 GNNMKSMAYVENI 561 NM+S+ Y++N+ Sbjct: 202 VGNMRSLVYLDNL 214Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 6, 2002 1:29 AM Number of letters in database: 279,182,324 Number of sequences in database: 0 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,298,345 Number of Sequences: 0 Number of extensions: 1909787 Number of successful extensions: 4824 Number of sequences better than 10.0: 88 Number of HSP's better than 10.0 without gapping: 4709 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4817 length of database: 74,921,317 effective HSP length: 109 effective length of database: 48,131,842 effective search space used: 7219776300 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)