Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.RID: 1014327969-7608-7020
Query= 10H4_131_132BLASTX (1134 letters)
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 884,168 sequences; 276,795,196 total letters
If you have any problems or questions with the results of this search
please refer to the BLAST FAQsScore E Sequences producing significant alignments: (bits) Value gi|16130293|ref|NP_416862.1| (NC_000913) orf, hypothetical ... 87 2e-29 gi|14195554|sp|P76514|YFDR_ECOLI Hypothetical protein yfdR 87 2e-29 gi|16130292|ref|NP_416861.1| (NC_000913) orf, hypothetical ... 95 3e-19 gi|15838250|ref|NP_298938.1| (NC_002488) conserved hypothet... 49 3e-05 gi|3925816|dbj|BAA34643.1| (AB020211) unnamed protein produ... 29 6.2Alignments >gi|16130293|ref|NP_416862.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12] gi|7466340|pir||F65009 hypothetical protein b2361 - Escherichia coli (strain K-12) gi|1788703|gb|AAC75420.1| (AE000324) orf, hypothetical protein [Escherichia coli K12] Length = 187 Score = 87.4 bits (215), Expect(2) = 2e-29 Identities = 46/89 (51%), Positives = 54/89 (59%) Frame = -2 Query: 422 LKS*FPTIAASENNIDFVIRXKFGLPATTSPIVKHADLVMLXTERRDLXIDDGTPWPMLN 243 LK P E ID VIR K+GLP S VK+ADL+ML TERRDL +DDG+ WP+L Sbjct: 92 LKRLLPDYKRMEEKIDAVIREKYGLPPVMSTPVKYADLIMLATERRDLGLDDGSFWPVLE 151 Query: 242 GIHPSEDIFVSPVXPXXAXAMFMRRFTXL 156 GI +E V P+ P A MFM RF L Sbjct: 152 GIPATEMFNVIPLAPGHAYGMFMERFNDL 180Score = 62.4 bits (150), Expect(2) = 2e-29 Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 4/99 (4%) Frame = -1 Query: 681 MSWILTFTGKRFDYEAPTVDAICIEDIAQALSHEXXL*XRFMVTFLNSIA-WRSIVSLPV 505 MS+I TF+GK F Y+ D I I DIA +LS+ + F ++ + S+ V Sbjct: 10 MSFIKTFSGKHFYYDKINKDDIVINDIAVSLSN--------ICRFAGHLSHFYSVAQHAV 61 Query: 504 KSSRLV---LLLKHY*HDAHEAYCKDIPSPLKKLIPDYR 397 S+LV + HDA EAYC+DIP+PLK+L+PDY+ Sbjct: 62 LCSQLVPQEFAFEALMHDATEAYCQDIPAPLKRLLPDYK 100>gi|14195554|sp|P76514|YFDR_ECOLI Hypothetical protein yfdR Length = 178 Score = 87.4 bits (215), Expect(2) = 2e-29 Identities = 46/89 (51%), Positives = 54/89 (59%) Frame = -2 Query: 422 LKS*FPTIAASENNIDFVIRXKFGLPATTSPIVKHADLVMLXTERRDLXIDDGTPWPMLN 243 LK P E ID VIR K+GLP S VK+ADL+ML TERRDL +DDG+ WP+L Sbjct: 83 LKRLLPDYKRMEEKIDAVIREKYGLPPVMSTPVKYADLIMLATERRDLGLDDGSFWPVLE 142 Query: 242 GIHPSEDIFVSPVXPXXAXAMFMRRFTXL 156 GI +E V P+ P A MFM RF L Sbjct: 143 GIPATEMFNVIPLAPGHAYGMFMERFNDL 171Score = 62.4 bits (150), Expect(2) = 2e-29 Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 4/99 (4%) Frame = -1 Query: 681 MSWILTFTGKRFDYEAPTVDAICIEDIAQALSHEXXL*XRFMVTFLNSIA-WRSIVSLPV 505 MS+I TF+GK F Y+ D I I DIA +LS+ + F ++ + S+ V Sbjct: 1 MSFIKTFSGKHFYYDKINKDDIVINDIAVSLSN--------ICRFAGHLSHFYSVAQHAV 52 Query: 504 KSSRLV---LLLKHY*HDAHEAYCKDIPSPLKKLIPDYR 397 S+LV + HDA EAYC+DIP+PLK+L+PDY+ Sbjct: 53 LCSQLVPQEFAFEALMHDATEAYCQDIPAPLKRLLPDYK 91>gi|16130292|ref|NP_416861.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12] gi|9910998|sp|P76513|YFDQ_ECOLI Hypothetical protein yfdQ gi|7452140|pir||E65009 hypothetical protein b2360 - Escherichia coli (strain K-12) gi|1788702|gb|AAC75419.1| (AE000324) orf, hypothetical protein [Escherichia coli K12] Length = 274 Score = 95.1 bits (235), Expect = 3e-19 Identities = 45/81 (55%), Positives = 57/81 (69%) Frame = -3 Query: 1012 EATSKDVMPVAFEFTCTPYKASGNAKFSLRNSLLKSDEPLFVLXIVQLEAQEEAIANEFR 833 EA +KD+MPVAFEF C P++ F LR S++ D P+ VL I+QLEA +E +ANEFR Sbjct: 194 EAKTKDIMPVAFEFKCVPFEGLKERPFKLRLSIITGDRPVLVLRIIQLEAVQEDMANEFR 253 Query: 832 DLLIDKFDGGSVETFIGNFKA 770 DLL++KF VETFIG F A Sbjct: 254 DLLVEKFKDSKVETFIGTFTA 274>gi|15838250|ref|NP_298938.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa 9a5c] gi|11280507|pir||E82655 conserved hypothetical protein XF1649 [imported] - Xylella fastidiosa (strain 9a5c) gi|9106706|gb|AAF84458.1|AE003991_10 (AE003991) conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 273 Score = 48.9 bits (115), Expect = 3e-05 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%) Frame = -3 Query: 1012 EATSKDVMPVAFEFTCTPYKASGNAKFSLRNSLLKSDE---PLFVLXIVQLEAQEEAIAN 842 +A S +P+ F T PY +F LR S+ +E PL L ++Q EAQ+E IA Sbjct: 189 QAKSSLGLPIGFTLTTKPYLGLPERRFLLRLSVFTDEEKEKPLITLRLIQREAQQEMIAQ 248 Query: 841 EFRDLLIDKFDGGSVETFIGNF 776 +F+ +L + +G + T IG F Sbjct: 249 DFKSVLFRELEGHATLT-IGTF 269>gi|3925816|dbj|BAA34643.1| (AB020211) unnamed protein product [Roseobacter denitrificans] Length = 195 Score = 28.9 bits (63), Expect(2) = 6.2 Identities = 31/107 (28%), Positives = 45/107 (41%), Gaps = 11/107 (10%) Frame = -1 Query: 678 SWILTFTGKRFDYEAPTVDAICIEDIAQALSHEXXL*XRFMVTFLNSIAWRSIV------ 517 +W +G+R D PT + IEDIA+ L+ + S+A S++ Sbjct: 4 AWQRMLSGRRLDLLDPTPVDVEIEDIARGLAFVARWNGQTSGAHAYSVAEHSLLVETLFT 63 Query: 516 ----SLPVKSSRLVLLLKHY*HDAHEAYCKDIPSPLKKLI-PDYRGI 391 P K RL LL HDA E D+ SP+K + P Y + Sbjct: 64 RIADKSPAK-WRLAALL----HDAPEYVIGDMISPVKAAVGPGYEAL 105Score = 20.8 bits (42), Expect(2) = 6.2 Identities = 10/29 (34%), Positives = 13/29 (44%) Frame = -2 Query: 407 PTIAASENNIDFVIRXKFGLPATTSPIVK 321 P A + + I +FGLPA VK Sbjct: 100 PGYEALDERLTAAIHLRFGLPAAIPVAVK 128Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Feb 21, 2002 1:44 AM Number of letters in database: 276,795,196 Number of sequences in database: 0 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 111,008,552 Number of Sequences: 0 Number of extensions: 1976785 Number of successful extensions: 3560 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3500 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3555 length of database: 74,788,179 effective HSP length: 113 effective length of database: 47,067,584 effective search space used: 12425842176 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)