Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.RID: 1014321792-27069-12713
Query= 10E5_131_132BLASTX (916 letters)
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 884,168 sequences; 276,795,196 total letters
If you have any problems or questions with the results of this search
please refer to the BLAST FAQsScore E Sequences producing significant alignments: (bits) Value gi|16121259|ref|NP_404572.1| (NC_003143) putative hydroxama... 254 7e-82 gi|15803576|ref|NP_289609.1| (NC_002655) putative iron comp... 152 7e-47 gi|15595349|ref|NP_248841.1| (NC_002516) probable TonB-depe... 154 4e-45 gi|17229677|ref|NP_486225.1| (NC_003272) ferrichrome-iron r... 86 1e-16 gi|17547448|ref|NP_520850.1| (NC_003295) PUTATIVE FERRICHRO... 87 2e-16 gi|15600030|ref|NP_253524.1| (NC_002516) probable outer mem... 84 2e-15 gi|17230118|ref|NP_486666.1| (NC_003272) ferrichrome-iron r... 67 1e-13 gi|17548321|ref|NP_521661.1| (NC_003296) PUTATIVE FERRISIDE... 76 4e-13 gi|17229640|ref|NP_486188.1| (NC_003272) ferrichrome-iron r... 74 1e-12 gi|16273651|ref|NP_439617.1| (NC_000907) Outer membrane rec... 64 8e-12 gi|8927578|gb|AAF82127.1| (AF279256) putative ferrichrome i... 70 2e-11 gi|17232416|ref|NP_488964.1| (NC_003272) ferrichrome iron r... 70 3e-11 gi|17229650|ref|NP_486198.1| (NC_003272) ferrichrome-iron r... 69 5e-11 gi|16329194|ref|NP_439922.1| (NC_000911) ferrichrome-iron r... 69 6e-11 gi|16329191|ref|NP_439919.1| (NC_000911) ferrichrome-iron r... 69 8e-11 gi|17229667|ref|NP_486215.1| (NC_003272) ferrichrome iron r... 67 2e-10 gi|17229728|ref|NP_486276.1| (NC_003272) ferrichrome-iron r... 67 2e-10 gi|17228596|ref|NP_485144.1| (NC_003272) ferrichrome iron r... 64 2e-09 gi|16763744|ref|NP_459359.1| (NC_003197) ferrioxamine recep... 64 2e-09 gi|15597662|ref|NP_251156.1| (NC_002516) probable TonB-depe... 64 2e-09 gi|16329201|ref|NP_439929.1| (NC_000911) ferrichrome-iron r... 59 3e-09 gi|17230102|ref|NP_486650.1| (NC_003272) ferrichrome-iron r... 62 6e-09 gi|15595667|ref|NP_249161.1| (NC_002516) probable hydroxama... 62 8e-09 gi|2981048|gb|AAC06220.1| (AF051691) hydroxamate-type ferri... 62 8e-09 gi|17230080|ref|NP_486628.1| (NC_003272) ferrichrome-iron r... 58 1e-08 gi|17368076|sp|O86241|YE6A_HAEIN Hypothetical tonB-dependen... 61 1e-08 gi|17230088|ref|NP_486636.1| (NC_003272) ferrichrome-iron r... 61 2e-08 gi|17230084|ref|NP_486632.1| (NC_003272) ferrichrome-iron r... 60 4e-08 gi|16125764|ref|NP_420328.1| (NC_002696) TonB-dependent rec... 60 4e-08 gi|15887758|ref|NP_353439.1| (NC_003062) AGR_C_718p [Agroba... 59 6e-08 gi|17229703|ref|NP_486251.1| (NC_003272) ferrichrome-iron r... 59 6e-08 gi|17934324|ref|NP_531114.1| (NC_003304) ferrichrome iron r... 59 6e-08 gi|16759342|ref|NP_454959.1| (NC_003198) ferrioxamine B rec... 57 2e-07 gi|16126022|ref|NP_420586.1| (NC_002696) TonB-dependent rec... 56 4e-07 gi|17230166|ref|NP_486714.1| (NC_003272) ferrichrome-iron r... 56 5e-07 gi|17549283|ref|NP_522623.1| (NC_003296) PROBABLE FERRISIDE... 55 7e-07 gi|17937718|ref|NP_534507.1| (NC_003305) hydroxamate-type f... 54 3e-06 gi|15890948|ref|NP_356620.1| (NC_003063) AGR_L_1661p [Agrob... 54 3e-06 gi|1753160|gb|AAB95192.1| (U79564) unidentified ferric side... 53 4e-06 gi|2501234|sp|Q47162|FCT_ERWCH FERRICHRYSOBACTIN RECEPTOR P... 52 6e-06 gi|17547639|ref|NP_521041.1| (NC_003295) PUTATIVE HYDROXAMA... 52 6e-06 gi|17938895|ref|NP_535683.1| (NC_003306) TonB-dependent rec... 52 8e-06 gi|16119538|ref|NP_396244.1| (NC_003064) AGR_pAT_446p [Agro... 52 8e-06 gi|15965976|ref|NP_386329.1| (NC_003047) PUTATIVE FERRICHRO... 49 7e-05 gi|473809|dbj|BAA05598.1| (D26562) 'ferrichrome-iron recept... 47 3e-04 gi|16128143|ref|NP_414692.1| (NC_000913) outer membrane pro... 47 3e-04 gi|4389224|pdb|1BY5|A Chain A, Fhua From E. Coli, With Its ... 47 3e-04 gi|17545519|ref|NP_518921.1| (NC_003295) PUTATIVE FERRISIDE... 47 3e-04 gi|9257159|pdb|1QJQ|A Chain A, Ferric Hydroxamate Receptor ... 46 6e-04 gi|1518696|gb|AAC44674.1| (U61401) FegA [Bradyrhizobium jap... 46 6e-04Alignments >gi|16121259|ref|NP_404572.1| (NC_003143) putative hydroxamate-type ferrisiderophore receptor [Yersinia pestis] gi|15979025|emb|CAC89799.1| (AJ414145) putative hydroxamate-type ferrisiderophore receptor [Yersinia pestis] Length = 699 Score = 254 bits (650), Expect(2) = 7e-82 Identities = 124/216 (57%), Positives = 157/216 (72%) Frame = -3 Query: 731 SHANAVQLTLNGDVDWGSINHQMLFGFDFEDNRTYRGDMIRGKKNSDFNIYHPVYGLMXX 552 SH+ AVQ +NGD+DWG +HQ++FG D+E R +RGDMIRG KN+ FN+Y P+YG + Sbjct: 336 SHSQAVQWVVNGDLDWGFTHHQLMFGIDYEARRVFRGDMIRGSKNNGFNVYDPIYGTLPP 395 Query: 551 XXXXXXXXXXEXFGAXSDQRENLTSYGWFMQDSIQLTDKWLVMGGLRYDAFDVYAGKGRP 372 A SDQREN+ S F+QDS++L + WL++GGLRYD+FDV AGKGRP Sbjct: 396 STAVSA--------ADSDQRENIDSRALFIQDSMRLNEHWLLLGGLRYDSFDVMAGKGRP 447 Query: 371 FQTNTDSSDXKLVPRSRGGLQADALRVLYSSYTESFKPNSSIATQIDSLPPEQGKSWEVG 192 F+ NTDSSD +LVPR+ + LY SYTESFKPN SIAT ID+LPPE GKSWE G Sbjct: 448 FKKNTDSSDSRLVPRAGVVYNLNDWSSLYVSYTESFKPNVSIATAIDALPPEYGKSWEAG 507 Query: 191 GKLALPNGVTGTLALFDITKRNVMVNELVEGETVTQ 84 K+ + N VTGTLA++DI KRN+MV+ELV+GETVT+ Sbjct: 508 YKIDINNRVTGTLAVYDIHKRNIMVSELVDGETVTR 543Score = 72.0 bits (175), Expect(2) = 7e-82 Identities = 34/49 (69%), Positives = 40/49 (81%) Frame = -2 Query: 882 IDQTLNERWKSSLTYAYSRNSYSDNQARATALNPVTGVLSRQADSTANA 736 I+ LNE W + L YA+SRNSYSDNQARATA N TGVL+RQ+D+TANA Sbjct: 286 INHDLNEFWSTQLNYAFSRNSYSDNQARATAFNAETGVLTRQSDATANA 334>gi|15803576|ref|NP_289609.1| (NC_002655) putative iron compound receptor [Escherichia coli O157:H7 EDL933] gi|15833171|ref|NP_311944.1| (NC_002695) putative ferrichrome iron receptor precursor [Escherichia coli O157:H7] gi|12517607|gb|AAG58168.1|AE005533_1 (AE005533) putative iron compound receptor [Escherichia coli O157:H7 EDL933] gi|13363390|dbj|BAB37340.1| (AP002564) putative ferrichrome iron receptor precursor [Escherichia coli O157:H7] Length = 713 Score = 152 bits (384), Expect(2) = 7e-47 Identities = 82/213 (38%), Positives = 118/213 (54%) Frame = -3 Query: 722 NAVQLTLNGDVDWGSINHQMLFGFDFEDNRTYRGDMIRGKKNSDFNIYHPVYGLMXXXXX 543 ++ + L G+VD +++L G +E R DMIR K DFNIY+PVYG Sbjct: 354 HSTRADLQGNVDIAGFYNEILGGVSYEYYDLLRTDMIRCKNAKDFNIYNPVYGNTSKCTT 413 Query: 542 XXXXXXXEXFGAXSDQRENLTSYGWFMQDSIQLTDKWLVMGGLRYDAFDVYAGKGRPFQT 363 + SDQ SY + QD++ LTD W+ + G+RY + YAGKGRPF Sbjct: 414 VSA--------SDSDQTIKQESYSAYAQDALYLTDNWIAVAGIRYQYYTQYAGKGRPFNV 465 Query: 362 NTDSSDXKLVPRSRGGLQADALRVLYSSYTESFKPNSSIATQIDSLPPEQGKSWEVGGKL 183 NTDS D + P+ + L+++Y+++F P SSIA+ I LPPE ++EVG K Sbjct: 466 NTDSRDEQWTPKLGLVYKLTPSVSLFANYSQTFMPQSSIASYIGDLPPESSNAYEVGAKF 525 Query: 182 ALPNGVTGTLALFDITKRNVMVNELVEGETVTQ 84 L +G+T +ALFDI KRNV+ E + ET+ + Sbjct: 526 ELFDGITADIALFDIHKRNVLYTESIGDETIAK 558Score = 57.4 bits (137), Expect(2) = 7e-47 Identities = 28/69 (40%), Positives = 40/69 (57%) Frame = -2 Query: 906 QLKLACLQIDQTLNERWKSSLTYAYSRNSYSDNQARATALNPVTGVLSRQADSTANAVKP 727 Q LA L + LN +W + Y+YS++ YSDNQAR TA + TG L+R+ D+T + + Sbjct: 293 QSDLAQLNAEYHLNSQWTARFDYSYSQDKYSDNQARVTAYDATTGTLTRRVDATQGSTQR 352 Query: 726 RQRGAADAQ 700 AD Q Sbjct: 353 MHSTRADLQ 361>gi|15595349|ref|NP_248841.1| (NC_002516) probable TonB-dependent receptor [Pseudomonas aeruginosa] gi|11351926|pir||C83626 probable TonB-dependent receptor PA0151 [imported] - Pseudomonas aeruginosa (strain PAO1) gi|9945982|gb|AAG03541.1|AE004453_4 (AE004453) probable TonB-dependent receptor [Pseudomonas aeruginosa] Length = 795 Score = 154 bits (389), Expect(2) = 4e-45 Identities = 90/210 (42%), Positives = 121/210 (56%), Gaps = 9/210 (4%) Frame = -3 Query: 710 LTLNGDVDWGSINHQMLFGFDFEDNRTYRGDMIRGKKNSDFNIYHPVYGLMXXXXXXXXX 531 L L+G + + H + FG D E + +R D++R K S F+ PVYG + Sbjct: 434 LGLSGTLQLAGMQHDLQFGMDHEKRKIFRADLLRDSKTSRFDYLDPVYGQVVPST----- 488 Query: 530 XXXEXFGAXSDQRENLTSYGWFMQDSIQLTDKWLVMGGLRYDAFDVYAGKGRPFQTNTDS 351 SDQ + L S + QDSI L ++W+++GG RY +D AG+GRPF NTD Sbjct: 489 ---RVVAGDSDQTDKLRSDSLYFQDSIHLDERWILVGGARYQIYDQLAGRGRPFNANTDI 545 Query: 350 SDXKLVPRSRGGL---QADALRVLYSSYTESFKPNSSIA-----TQIDS-LPPEQGKSWE 198 + K VP RGGL +D + LY SY SFKPNS+IA IDS + PE+ SWE Sbjct: 546 NGQKWVP--RGGLVYRLSDEVS-LYGSYMRSFKPNSTIAPLSTGETIDSAILPEEATSWE 602 Query: 197 VGGKLALPNGVTGTLALFDITKRNVMVNEL 108 +G KL +P ++GTLALFDI K+NV+VNEL Sbjct: 603 LGAKLDVPGRLSGTLALFDIRKKNVLVNEL 632Score = 49.7 bits (117), Expect(2) = 4e-45 Identities = 24/56 (42%), Positives = 35/56 (61%) Frame = -2 Query: 900 KLACLQIDQTLNERWKSSLTYAYSRNSYSDNQARATALNPVTGVLSRQADSTANAV 733 +L L +++ L++ WK+ Y YSR +Y DNQAR A+N G L+R+ D T AV Sbjct: 372 ELTRLDLERQLDDTWKAHFGYGYSRETYDDNQARVMAVN-ADGTLTRRMDGTHGAV 426>gi|17229677|ref|NP_486225.1| (NC_003272) ferrichrome-iron receptor [Nostoc sp. PCC 7120] gi|17131276|dbj|BAB73884.1| (AP003588) ferrichrome-iron receptor [Nostoc sp. PCC 7120] Length = 853 Score = 85.5 bits (210), Expect(2) = 1e-16 Identities = 70/222 (31%), Positives = 102/222 (45%), Gaps = 5/222 (2%) Frame = -3 Query: 719 AVQLTLNGDVDWGSINHQMLFGFDFEDNRTYRGDMIRGKKNSDFNIYHPVYGLMXXXXXX 540 ++Q + G GSI H +L G DF NR D++ + NI++PVYG+ Sbjct: 503 SLQTNVVGKFTTGSIKHTLLAGVDF--NRGLLDDLVFRGTRTTLNIFNPVYGVPPRTDFS 560 Query: 539 XXXXXXEXFGAXSDQRENLTSYGWFMQDSIQLTDKWLVMGGLRYDAFDVYAGKGRPFQTN 360 + + T G+++QD I L +++ V+ GLRYD D T Sbjct: 561 T-------LPPATPFKNETTRLGFYLQDQIALNNQFTVLAGLRYDTVDFK-------DTF 606 Query: 359 TDSSDXKLVPRSRGGLQADALRVL--YSSYTESFKPNSSIATQIDSLPPEQGKSWEVGGK 186 TD S GL + L Y+SY+ SF P+ S D L PE+G +EVG K Sbjct: 607 TDESKYDSAWSPVIGLVYKPVENLSIYTSYSRSFVPSFSRDANGDFLQPERGAGYEVGIK 666 Query: 185 LALPNG-VTGTLALFDITKRNVMV--NELVEGETVTQHRRAR 69 L G + TLA FDITK+NV +++ T +R+R Sbjct: 667 AELLQGNLFATLAYFDITKQNVSTADPDVLGASVATGEQRSR 708Score = 23.1 bits (48), Expect(2) = 1e-16 Identities = 9/41 (21%), Positives = 19/41 (45%) Frame = -2 Query: 882 IDQTLNERWKSSLTYAYSRNSYSDNQARATALNPVTGVLSR 760 ++ ++ W ++ Y + A +LN TG+L+R Sbjct: 450 LEHRFSDNWTLRNSFRYLQQDLFTQATLAGSLNETTGILTR 490>gi|17547448|ref|NP_520850.1| (NC_003295) PUTATIVE FERRICHROME-IRON RECEPTOR PROTEIN [Ralstonia solanacearum] gi|17429751|emb|CAD16436.1| (AL646071) PUTATIVE FERRICHROME-IRON RECEPTOR PROTEIN [Ralstonia solanacearum] Length = 689 Score = 87.0 bits (214), Expect = 2e-16 Identities = 64/213 (30%), Positives = 99/213 (46%), Gaps = 7/213 (3%) Frame = -3 Query: 728 HAN--AVQLTLNGDVDWGSINHQMLFGFDFEDNRTYRGDMIRGKKNSD----FNIYHPVY 567 HAN A ++ L G+V G + H ++ G DF + R Y + R ++ +I+ PVY Sbjct: 330 HANDLAGRVDLQGEVATGPVRHTLVAGADFYNFR-YDPVLYRANPSASAPYAIDIFDPVY 388 Query: 566 GLMXXXXXXXXXXXXEXFGAXSDQRENLTSYGWFMQDSIQLTDKWLVMGGLRYDAFDVYA 387 G S RE+ +G F+QD + LT +W ++ G+R D F +A Sbjct: 389 G-----------QPRPALRPSSSTRESQRGFGAFVQDQVTLTPQWKLLAGVRMDRFLQHA 437 Query: 386 GKGRPFQTNTDSSDXKLVPRSRGGLQADALRVLYSSYTESFKPNSSIATQIDSLPPEQGK 207 R PR Q LY++ SF+PN+ + Q ++ PE+G+ Sbjct: 438 DN-RLTGARVAQQQTAYSPRLGLVYQPTQTLSLYANTARSFRPNTGVGAQGNAFAPERGR 496 Query: 206 SWEVGGKLALPNG-VTGTLALFDITKRNVMVNE 111 +EVG KL +G GTLAL+ I K NV+ + Sbjct: 497 GYEVGAKLETADGRFGGTLALYSIDKTNVLTGD 529>gi|15600030|ref|NP_253524.1| (NC_002516) probable outer membrane protein [Pseudomonas aeruginosa] gi|11351573|pir||A83043 probable outer membrane protein PA4837 [imported] - Pseudomonas aeruginosa (strain PAO1) gi|9951106|gb|AAG08222.1|AE004896_12 (AE004896) probable outer membrane protein [Pseudomonas aeruginosa] Length = 708 Score = 83.6 bits (205), Expect = 2e-15 Identities = 65/214 (30%), Positives = 101/214 (46%), Gaps = 11/214 (5%) Frame = -3 Query: 728 HANAVQLTLNGDVDWGSINHQMLFGFDFEDNRTYRGD-----MIRGKKNSDFNIYHPVYG 564 H + QL L GD+ GSI HQ+L G ++E Y D I + +I PVYG Sbjct: 346 HDSITQLDLLGDLHTGSIRHQLLMGLEYE---RYHNDELILRSIPSRNPYAIDIRRPVYG 402 Query: 563 LMXXXXXXXXXXXXEXFGAXSDQRENLTSYGWFMQDSIQLTDKWLVMGGLRYDAF--DVY 390 FG E + + +QD I+ ++KW + G+R+D + D+ Sbjct: 403 -----------QPKPPFGRDDRNHEEVDAMALNLQDQIEFSEKWRGLLGVRFDRYRQDMN 451 Query: 389 AGK---GRPFQTNTDSSDXKLVPRSRGGLQADALRVLYSSYTESFKPNSSIATQIDSLPP 219 A + GR +T++ + PR QA L+++ ++SFKPN + P Sbjct: 452 ATRLNNGRFRETSSQQTQRAATPRIGVLYQATPEVGLFANASKSFKPNGGTDMAGKAFDP 511 Query: 218 EQGKSWEVGGKLALPNGVTG-TLALFDITKRNVM 120 E+G+ +E G KL L +G G TLA F + K+NV+ Sbjct: 512 EEGRGYEAGVKLDLLDGRLGMTLAAFHLKKKNVL 545>gi|17230118|ref|NP_486666.1| (NC_003272) ferrichrome-iron receptor [Nostoc sp. PCC 7120] gi|17131719|dbj|BAB74325.1| (AP003590) ferrichrome-iron receptor [Nostoc sp. PCC 7120] Length = 872 Score = 67.0 bits (162), Expect(2) = 1e-13 Identities = 59/206 (28%), Positives = 88/206 (42%), Gaps = 3/206 (1%) Frame = -3 Query: 716 VQLTLNGDVDWGSINHQMLFGFDFEDNRTYRGDMIR--GKKNSDFNIYHPVYGLMXXXXX 543 +Q + G GSINH +LFG D T G R G N+++PVY + Sbjct: 517 LQTDVVGKFITGSINHTLLFGVDLA-RFTSGGTQSRLPGVITPSINVFNPVYNAIPRPGL 575 Query: 542 XXXXXXXEXFGAXSDQRENLTSYGWFMQDSIQLTDKWLVMGGLRYDAFDVYAGKGRPFQT 363 E + ++ T G F+Q+ I D ++ G R+D D + R + Sbjct: 576 D------ELTNVVRNNQDRSTGLGIFLQNQIAFADNLKLLVGGRFDTVDQNSTDLRD-GS 628 Query: 362 NTDSSDXKLVPRSRGGLQADALRVLYSSYTESFKPNSSIATQIDSLPPEQGKSWEVGGKL 183 + D PR Q LY+SY++SF+PN L E+G +EVG K Sbjct: 629 ESGRYDSAFTPRLGIVYQPIEPISLYASYSQSFQPNFGTRVDGSILEAERGTQYEVGVKG 688 Query: 182 ALPNG-VTGTLALFDITKRNVMVNEL 108 +G + TLA + ITK N+ +L Sbjct: 689 EFLDGRLAATLAAYHITKSNIAATDL 714Score = 31.2 bits (69), Expect(2) = 1e-13 Identities = 14/52 (26%), Positives = 28/52 (52%) Frame = -2 Query: 915 ELEQLKLACLQIDQTLNERWKSSLTYAYSRNSYSDNQARATALNPVTGVLSR 760 ++E++ L+ +++ N+ WK + Y + D +A LN TG+L+R Sbjct: 453 KVEEIGLS-YRLEHNFNDNWKIRNAFRYQSSDTFDYRAEPVRLNETTGILTR 503>gi|17548321|ref|NP_521661.1| (NC_003296) PUTATIVE FERRISIDEROPHORE RECEPTOR PROTEIN [Ralstonia solanacearum] gi|17430567|emb|CAD17251.1| (AL646076) PUTATIVE FERRISIDEROPHORE RECEPTOR PROTEIN [Ralstonia solanacearum] Length = 703 Score = 76.3 bits (186), Expect = 4e-13 Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 5/208 (2%) Frame = -3 Query: 728 HANAVQ--LTLNGDVDWGSINHQMLFGFD---FEDNRTYRGDMIRGKKNSDFNIYHPVYG 564 H N +Q L L G + G++ H ++ G D F ++ +I++PVYG Sbjct: 344 HTNDLQGRLELTGKLQTGAVGHTLVMGADAYRFTYDQLVERSTPTAAAPYAIDIFNPVYG 403 Query: 563 LMXXXXXXXXXXXXEXFGAXSDQRENLTSYGWFMQDSIQLTDKWLVMGGLRYDAFDVYAG 384 ++ E G ++QD++ L ++W V+ GLR+D + + Sbjct: 404 -----------QATPALRTVTNALERDEGQGAYVQDTLALGERWKVIAGLRWDGYR-QSI 451 Query: 383 KGRPFQTNTDSSDXKLVPRSRGGLQADALRVLYSSYTESFKPNSSIATQIDSLPPEQGKS 204 + R T T PR Q +Y++ SF+PNS ++ PE+G+ Sbjct: 452 EDRKSGTTTSQQQTAFSPRLGVVYQWSPAFSVYANTAYSFRPNSGTDVNGNAFDPEKGRG 511 Query: 203 WEVGGKLALPNGVTGTLALFDITKRNVM 120 +EVG K A P G T+A F +TKRNV+ Sbjct: 512 YEVGAKWAGP-GWLATVAAFSVTKRNVL 538>gi|17229640|ref|NP_486188.1| (NC_003272) ferrichrome-iron receptor [Nostoc sp. PCC 7120] gi|17131239|dbj|BAB73847.1| (AP003588) ferrichrome-iron receptor [Nostoc sp. PCC 7120] Length = 863 Score = 74.3 bits (181), Expect = 1e-12 Identities = 57/200 (28%), Positives = 87/200 (43%), Gaps = 2/200 (1%) Frame = -3 Query: 713 QLTLNGDVDWGSINHQMLFGFDFEDN-RTYRGDMIRGKKNSDFNIYHPVYGLMXXXXXXX 537 Q+ L G + GSI+HQ+L GFDF N T+ + R N D I++P Y + Sbjct: 511 QIDLLGKFNTGSISHQILIGFDFNHNIDTFARVVQRNVPNLD--IFNPNYNIPSF----- 563 Query: 536 XXXXXEXFGAXSDQRENLTSYGWFMQDSIQLTDKWLVMGGLRYDAFDVYAGKGRPFQTNT 357 +G S E +YG ++QD I D ++ G R+D T Sbjct: 564 ------DYGPRSSSTERFQTYGIYLQDQITFLDNLKLLIGGRFDWISGENTDNVTGDTTQ 617 Query: 356 DSSDXKLVPRSRGGLQADALRVLYSSYTESFKPNSSIATQIDSLPPEQGKSWEVGGKLAL 177 + PR Q LY+SY++SF P + + + P +G +E G K Sbjct: 618 NPDSSAFSPRIGLVYQPSKSVSLYTSYSQSFVPETGVNPDGEIFEPTRGTQYEAGIKADF 677 Query: 176 PNG-VTGTLALFDITKRNVM 120 G ++ TLA + ITK N++ Sbjct: 678 LEGRLSATLAAYQITKSNIL 697>gi|16273651|ref|NP_439617.1| (NC_000907) Outer membrane receptor protein [Haemophilus influenzae Rd] Length = 734 Score = 63.5 bits (153), Expect(2) = 8e-12 Identities = 59/221 (26%), Positives = 98/221 (43%), Gaps = 8/221 (3%) Frame = -3 Query: 722 NAVQLTLNGDVDWGSINHQMLFGFDFEDNRTYRGDMIRGKKNSD---FNIYHPVYGLMXX 552 ++V L G+ G I ++ + G D N+ G + + +D NI +P Y Sbjct: 360 HSVSLNTVGEFAIGDIANRFVVGTDLMRNKMDLGPIYNTRDINDGKVINIDNPNY----- 414 Query: 551 XXXXXXXXXXEXFGAXSDQRENLTSYGWFMQDSIQLTDKWLVMGGLRYDAFDVYAGKGRP 372 + + Q +L + G ++Q++ TD +++ GGLRY+ FD G+ Sbjct: 415 ---TNPVAIKKNENNNAYQFNHLKTLGLYIQNTTYFTDNFIITGGLRYEYFDQVVGRSTL 471 Query: 371 FQTNTD---SSDXKLVPRSRGGLQADALRVLYSSYTESFKPNSSIATQID-SLPPEQGKS 204 + D KL+ + + + ++ ESF+P ++ I+ LP EQGKS Sbjct: 472 KNIRSGYLAQKDGKLLYQLGSVYKFTPNIATFFNHAESFRPQNNRTLIINGELPAEQGKS 531 Query: 203 WEVGGKLALPNG-VTGTLALFDITKRNVMVNELVEGETVTQ 84 +E G L N + T+ALF+I KRNV V G Q Sbjct: 532 FETG--LKYENAYLNATVALFNINKRNVAETVNVNGTNELQ 570Score = 28.5 bits (62), Expect(2) = 8e-12 Identities = 11/34 (32%), Positives = 21/34 (61%) Frame = -2 Query: 885 QIDQTLNERWKSSLTYAYSRNSYSDNQARATALN 784 +++ L++ WK + Y+Y+R + NQAR +N Sbjct: 292 KVEHKLSDCWKLNFGYSYARYKHFYNQARIKDIN 325Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Feb 21, 2002 1:44 AM Number of letters in database: 276,795,196 Number of sequences in database: 884,168 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 407,076,995 Number of Sequences: 884168 Number of extensions: 7892955 Number of successful extensions: 25371 Number of sequences better than 10.0: 153 Number of HSP's better than 10.0 without gapping: 23752 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 25277 length of database: 276,795,196 effective HSP length: 119 effective length of database: 171,579,204 effective search space used: 31742152740 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)